BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936218

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04047.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   198    2e-50


> AT2G04047.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr2:1317153-1317386 FORWARD LENGTH=234
Length=234

 Score =  198 bits (107),  Expect = 2e-50
 Identities = 143/160 (89%), Gaps = 3/160 (2%)
 Strand=Plus/Plus

Query  71   TGCATTGATGGTGAGTATTCCGACAGCGGAAGCTCAGATTTTTCTTCCTTGCAAAACAAA  130
            |||| ||||||||||||||| ||||| ||| |||| || ||||| |||||||||||||||
Sbjct  73   TGCAATGATGGTGAGTATTCTGACAGGGGACGCTC-GAATTTTCCTCCTTGCAAAACAAA  131

Query  131  CAAAGATTGTGAATATTTTCACTGCTCGAGCGGGACACCTTTATGTATCAT-GAGACAAT  189
            |||||||||  ||||| ||||||||||||||| ||||||| ||||| | || ||||||||
Sbjct  132  CAAAGATTGCAAATATCTTCACTGCTCGAGCGAGACACCTCTATGTGT-ATGGAGACAAT  190

Query  190  GCACATGTACCATTTCATCGACTCATCAAGCGAAACTTGA  229
             |||||||||||||||||||||||||||||||||| ||||
Sbjct  191  ACACATGTACCATTTCATCGACTCATCAAGCGAAATTTGA  230



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12265330756


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5