BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936232

Length=1034
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19520.1 | Symbols:  | Protein of unknown function (DUF626) ...  93.5    4e-18
  AT1G23950.2 | Symbols:  | Protein of unknown function (DUF626) ...  52.8    6e-06


> AT3G19520.1 | Symbols:  | Protein of unknown function (DUF626) 
| chr3:6772687-6774445 FORWARD LENGTH=1261
Length=1261

 Score = 93.5 bits (50),  Expect = 4e-18
 Identities = 111/139 (80%), Gaps = 10/139 (7%)
 Strand=Plus/Plus

Query  701  CTA-ATGTCTACATAACGTTTAAGGGCTTGGCCATGGCTAGTATTGGTGA-GC--TTGGT  756
            ||| |||||||||||||||||||||||||||||| ||||  ||||||||| |   |||||
Sbjct  816  CTACATGTCTACATAACGTTTAAGGGCTTGGCCAAGGCTCCTATTGGTGATGAGATTGGT  875

Query  757  GAGCATGTTGTTCGAAAAGTTATCA-TTAGAAGAGCC-TTCAATGAGC-TTACTGGATGC  813
            ||||||||||  || |||| ||| | || |||||| | || | ||||| || | |||  |
Sbjct  876  GAGCATGTTGAACGCAAAGCTAT-AGTTCGAAGAGTCATTGA-TGAGCGTT-CAGGACAC  932

Query  814  ATGACTCTCCTGGGTGGGT  832
             |||| || || |||||||
Sbjct  933  TTGACGCTTCTCGGTGGGT  951


> AT1G23950.2 | Symbols:  | Protein of unknown function (DUF626) 
| chr1:8469550-8471417 REVERSE LENGTH=1348
Length=1348

 Score = 52.8 bits (28),  Expect = 6e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  704  ATGTCTACATAACGTTTAAGGGCTTGGC  731
            ||||||||||||||||||||||||||||
Sbjct  957  ATGTCTACATAACGTTTAAGGGCTTGGC  984



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 50686254323


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5