BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936236
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25590.1 | Symbols: | unknown protein; Has 149 Blast hits t... 1980 0.0
> AT3G25590.1 | Symbols: | unknown protein; Has 149 Blast hits
to 140 proteins in 44 species: Archae - 0; Bacteria - 6; Metazoa
- 40; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes
- 58 (source: NCBI BLink). | chr3:9302010-9303615 FORWARD
LENGTH=1606
Length=1606
Score = 1980 bits (1072), Expect = 0.0
Identities = 1241/1321 (94%), Gaps = 17/1321 (1%)
Strand=Plus/Plus
Query 1 TCTTGATTTTGCTTTTGCCAATGAAAGAAAAAGGAAAGAGAACAGCAACGGAACGAAGAA 60
||||||||||| || | |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 244 TCTTGATTTTG-TTAAG-CAATGAAAGAAAGAGGAAAGAGAACAGCAATGGAACGAAGAA 301
Query 61 ACGACGACGCTTCGTTATATTACAGCACTCCGTCGGAATTCACTTGCCGGAAACATCCAT 120
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 302 ACGACGACGTTTCGTTATATTACAGTACTCCGTCGGAATTCACTTGCCGGAAACATCCAT 361
Query 121 CTGTTTCTTCCGGCGTCGGTATTTGTCCGTACTGTCTCAACGACAGATTAGTCAACCTCG 180
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 362 CTGTTTCCTCCGGCGTTGGTATTTGTCCGTACTGTCTCAACGACAGATTAGTCAATCTCG 421
Query 181 TCTGCTCCGAATGCGGTGAGCAGCGTCTCTCTTCTTGCTCGTGCTCCGACATCTCTCCGA 240
| |||||||||||||| |||||||| ||||||||||||||||| || || |||||||| |
Sbjct 422 TATGCTCCGAATGCGGCGAGCAGCGACTCTCTTCTTGCTCGTGTTCTGATATCTCTCCTA 481
Query 241 ATCGAA-CATCCA-ACGCCGCCGTAGACGCCGCCGCCGGAGAAAACGTTGTTC-GGATCT 297
||||| | | | | ||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 482 CTCGAACCGT--AGATGCCGCCGTAGACGCCGCCGTCGGAGAAAACGTTG-TCAGGATCT 538
Query 298 CTTCTCTCATCGATGAAGAAACTACGAAACAGAGGAAAGAGACAAAACAGAGGAAAACAG 357
||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 539 CTTCTCTCATCGACGAAGAGAGGGCGAAACAGAGGAAAGAGACGAAACAGAGGAAAACAG 598
Query 358 AGGAAGTGGTGGTGTTCAAGAGAAGTAGTAGCAGTTGTGTTGAGATTAATAAGAGAACGA 417
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 599 AGGAAGTGGTAGTGTTCAAGAGGAGTAGTAGCAGTTGTGTTGAGATTAATAAGAGGACGA 658
Query 418 AGAATTATAGATTCTCGAGAATCGGTAGGTTTTTCCGGAAGATTAATCTTAAAAAGGAGA 477
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 659 AGAATCATAGATTCTCGAGAATCGGTAGGTTTTTCAGGAAGATTAATCTTAAAAAAGAGA 718
Query 478 GAGATTTTGAGAAGAACAATAATAACGATTCATGGGTTTTGGATTATAACAATGATGTGA 537
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 GAGATTTTGAGAAGAACAATAATAATGATTCATGGGTTTTGGATTATAACAATGATGTGA 778
Query 538 AGAAGCTTGGAGTTTCGAGATCGAGATCGCTTTGTAGTTTTCGAGGAAAAGACTTGTATT 597
|||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 779 AGAAACTAGGAGTTTCGAGATCGAGATCGCTTTGTAGCTTTCGAGGAAAAGATTTGTATT 838
Query 598 GTCTCGGATCGGAAGAAGATGGTTCGTCGTATTCCGGTGCTTTCTCCGCCGCGAGAAGCT 657
|| ||||||| |||||||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct 839 GTATCGGATCAGAAGAAGACGGTTCTTCGTATTCGGGTGCTTTCTCCGCCGCGAGGAGCT 898
Query 658 CAAGTGTTAATGGCGGATTAGGGTTATGCGAAACAGAGTATCCTCGGAAGAGTAACTTCG 717
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 899 CAAGTGTTAATGGCGGATTAGGGTTATGCGAAACAGAGTATTCTCGGAAGAGTAACTTCG 958
Query 718 AAGGAAGGAAGAGTAACTTCAGCGAGACGACGGAGCATCGGAAGAGTAATTTCGAAGGTG 777
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 959 AAGGAAGGAAGAGCAACTTCAGCGAGACGACGGAGCATTGGAAGAGTAATTTCGAAGGAG 1018
Query 778 GGAGGAAGAGTAATTTCAGCGAGACGACGACGGAGAATCGGAAAAGTAATTTCAGTGAAT 837
| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1019 GAAGGAAGAGTAATTTCAGTGAGACGACGACGGAGAATCGGAAGAGTAATTTCAGTGAAT 1078
Query 838 CGGAGCCGCCGCGAAGAAGCGGTTTCGAGGCGAGGAAGAGTAATTTCAGTGAAACAGAGT 897
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1079 CGGAGCCGCCGAGAAGAAGCGGTTTCGAGGCTAGGAAGAGTAATTTCAGTGAAACAGAGT 1138
Query 898 ATCCTAC-ACGGAGGAGTAATTTTAGTGAAACAGAGTATAATAGTCGGAGAGGAAACAAT 956
||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1139 ATCCTACTA-GGAGGAGTAATTTTAGTGAAACAGAGTATAATACTCGAAGAGGAAACAAT 1197
Query 957 CTGGCGACGGCGGAGAATCATCCACGGAGGAGTAGTAATTACGAAGCAGCGAGGAAAAGT 1016
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CCGGCGACGGCGGAGAATCATCCACGGAGGAGTAGTAATTACGAAGCAGCGAGGAAAAGC 1257
Query 1017 GATTCGGCGGCGATGAATTTTACGAGAAGGGTAATGTCAATGAAAGAGAGTAGTTACTTC 1076
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1258 GATTCGGCGGCGATGAATTTTACGAGAAGGGTAATGTCGATGAAAGAGAGTAGCTACTTC 1317
Query 1077 ACCGGAGGAGAAGAGCCTGGTTTCATTGATCTTAAGTTTGATTCTT-C--TGGTGGAGGA 1133
||||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 1318 ACCGGAGGAGAGGAGCCTGGTTTCATTGATCTTAAGTTTGATTCTTCCGGTGGAGGAGGA 1377
Query 1134 GGAGATGTAAACGACGGCGTTTTGGAACATGGAGGAGGAGGAGGATCTTGTCGGAAAGAT 1193
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1378 GGAGATGTAAACGACGGCGTTTTGGAACA---CGGAGGAGGAGGATCTTGTCGGAAAGAT 1434
Query 1194 GGAGGAGAGTTGCGTAAGAGTCGAAAGAGTTTCAAAGGATGGAAATGGATATTTGGACAT 1253
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1435 GGAGGAGAGTTGCGTAAGAGTCGAAAGAGTTTCAAAGGATGGAAGTGGATATTTGGACAT 1494
Query 1254 CATCAACATCAACTTCATCATCATAATAGAGATTCATGATGAATTTATGAATTAT-GAAG 1312
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1495 CATCAACATCAACTTCATCATCATAACAGAGATTCATGATGAATTTATGAATTATTGAAG 1554
Query 1313 G 1313
|
Sbjct 1555 G 1555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64608101415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5