BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936240
Length=2056
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25620.2 | Symbols: | ABC-2 type transporter family protein... 3227 0.0
> AT3G25620.2 | Symbols: | ABC-2 type transporter family protein
| chr3:9316074-9319571 REVERSE LENGTH=2688
Length=2688
Score = 3227 bits (1747), Expect = 0.0
Identities = 1962/2064 (95%), Gaps = 21/2064 (1%)
Strand=Plus/Plus
Query 2 TCTCTCTTTTTC-TCTCTAGATGATGCCTCCTAATGAGCAAGAATCTAGCTTTCCGAAAA 60
|||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 48 TCTCTC-TTTCCTTCTCTAGATGATGCCTCCTAATGAGCAAGAATCTAGCTTTCCGAAAA 106
Query 61 CACCAG-GCGCAAACCGACACGAAACTAGTCCGGTTCAAGATAACCGGCTTAGCTCTCCA 119
|||| | |||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 107 CACC-GAGCGCAAACCGACACGAAACTAGTCCGGTTCAAGAAAACCGGTTTAGCTCTCCA 165
Query 120 AGTCATGTAATCCCATGCCTT---GACGAT---GACCACGACGGTCCGAGTCACCAATCA 173
|||||||||| |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 166 AGTCATGTAAACCCATGCCTTGACGACGATAACGACCACGACGGTCCGAGTCACCAATCA 225
Query 174 AGACAGTCTTCTGTTCTACGTCAATCTTTACGTCCTATAATCCTCAAGTTTGAGGAATTG 233
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 226 AGACAATCTTCTGTTCTACGTCAATCTTTACGTCCTATAATCCTCAAGTTTGAGGAGTTG 285
Query 234 TCGTACAGTATAAAATCACAAACCGGGAAAGGAAGCTATTGGTTCGGTTCACAAGAACCA 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 ACGTACAGTATCAAATCACAAACCGGGAAAGGAAGCTATTGGTTCGGTTCACAAGAACCA 345
Query 294 AAACCGAACCGGTTAATCCTTAACGGTGTAAGTGGTATAGTCAAACCAGGGGAGTTACTA 353
||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 346 AAACCGAACCGGTTAGTCCTCAAATGTGTAAGTGGTATAGTCAAACCAGGGGAGTTACTA 405
Query 354 GCAATGCTTGGTCCATCAGGGAGTGGCAAAACAACGCTAGTAACGGCGTTGGCCGGACGT 413
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 406 GCAATGCTTGGTCCATCAGGGAGTGGCAAAACAACGCTAGTAACGGCGCTAGCCGGCCGT 465
Query 414 TTACAAGGGAAGCTATCAGGAACCGTTAGCTATAACGGAGAACCGTTTACAAGCTCCGTT 473
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 466 TTACAAGGGAAGTTATCAGGAACCGTTAGCTATAACGGAGAGCCGTTTACAAGCTCAGTT 525
Query 474 AAACGGAAAACGGGGTTCGTTACACAAGACGATGTTCTCTACCCACACTTAACGGTCATG 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 AAACGGAAAACGGGGTTCGTTACACAAGACGATGTTCTCTACCCACACTTAACGGTCATG 585
Query 534 GAGACGCTAACGTACACGGCTTTGCTCCGTTTACCTAAAGAGCTGACCCGGAAAGAGAAG 593
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 586 GAGACGCTAACGTACACGGCTTTGCTCCGTTTACCAAAAGAGTTGACCCGGAAAGAGAA- 644
Query 594 A-TAGAGCAGGCGGAGACAGTGCTTTCGGATCTTGGGTTGACCCGGTGTTGTAACAGTGT 652
| ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 645 ACTAGAGCAGGTGGAGATGGTGGTTTCGGATCTTGGGTTGACCCGGTGTTGTAACAGTGT 704
Query 653 AATAGGAGGCGGGTTGATCCGAGGAATTTCCGGTGGGGAAAGAAAACGGGTAAGTATTGG 712
|| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 705 TATCGGAGGCGGGTTGATCCGAGGAATTTCGGGTGGGGAAAGGAAACGGGTAAGTATTGG 764
Query 713 ACAAGAAATGCTTGTGAACCCAAGTTTGTTGCTTCTTGATGAGCCAACGTCGGGGCTTGA 772
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 765 ACAAGAAATGCTAGTGAATCCGAGTTTGTTGCTTCTTGATGAGCCAACGTCGGGGCTTGA 824
Query 773 TTCAACCACGGCGG-TGCGAATAGTCGCCACCTTGAGATCGCTGGCACGCGGCGGCCGGA 831
||| |||||||||| | || ||||||||||||||||||||||| ||||| || || ||||
Sbjct 825 TTCTACCACGGCGGCT-CGTATAGTCGCCACCTTGAGATCGCTAGCACGTGGTGGTCGGA 883
Query 832 CGGTTGTTACGACGATTCATCAGCCGTCGAGTCGGCTTTATCGGATGTTTGATAAAGTGT 891
|||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 884 CGGTGGTGACGACGATTCATCAGCCGTCGAGTAGGCTTTATCGGATGTTCGATAAAGTGT 943
Query 892 TGGTTTTATCAGAAGGATGTCCTATTTATAGTGGGGATTCGGGTCGGGTCATGGAGTATT 951
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 944 TGGTTTTATCGGAAGGGTGTCCTATTTATAGTGGAGATTCGGGTCGGGTCATGGAATATT 1003
Query 952 TTGGTTCGATTGGGTATCAACCCGGATCCAGTTTCGTTAACCCAGCTGACTTT-GTGCTA 1010
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 1004 TTGGTTCGATTGGGTATCAACCCGGATCCAGTTTCGTTAACCCGGCTGA-TTTCGTGCTT 1062
Query 1011 GATCTTGCTAACGGAATTACTTCGGATACAATACAATATGATCAAGTCGAAA-TAAATGG 1069
||||||||||||||||||||||||||||||| ||||||||||||| |||||| | |||||
Sbjct 1063 GATCTTGCTAACGGAATTACTTCGGATACAAAACAATATGATCAAATCGAAACT-AATGG 1121
Query 1070 AAGATTAGATCGGCTTGAAGAACAAAACTCCGTGAAACAATCGTTAATATCGTCTTACAA 1129
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1122 AAGATTAGATCGGCTTGAAGAACAAAACTCAGTGAAACAATCGTTAATATCGTCATACAA 1181
Query 1130 AAAGAATTTGTATCCACCTCTGAAAGAAGAAGTGTCTAGAACATTTCCACAAGATCAAAC 1189
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1182 AAAGAATTTGTATCCACCTTTGAAAGAAGAAGTGTCTAGAACGTTTCCACAAGATCAAAC 1241
Query 1190 GATCACTAGATCGAGAACAAAGTCATTATTAACCAATCGATGGCCAACGAGTTGGTGGAT 1249
|| | |||||| ||||| |||| || | |||| ||||||||||||||||||||||||||
Sbjct 1242 GAACGCTAGATTGAGAAAAAAGGCA--A-TAACAAATCGATGGCCAACGAGTTGGTGGAT 1298
Query 1250 GCAATTCTCAGTTCTACTGAAACGAGGTTTAAAAGAGAGAAGTCACGAATCATTTTCAGG 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 GCAATTCTCAGTTCTACTGAAACGAGGTTTAAAAGAGAGAAGTCACGAATCATTTTCAGG 1358
Query 1310 ACTTAGAATATTTATGGTCATGTCAGTTTCTTTACTTTCTGGCCTCTTATGGTGGCATTC 1369
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1359 ACTCAGAATATTTATGGTCATGTCAGTTTCTTTACTTTCAGGCCTCTTGTGGTGGCATTC 1418
Query 1370 TCGCGTTGCTCACTTACAAGATCAGGTGGGTTTATTGTTCTTCTTCTCGATATTTTGGGG 1429
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 TCGCGTTGCTCATTTACAAGATCAGGTGGGTTTATTGTTCTTCTTCTCGATATTTTGGGG 1478
Query 1430 ATTCTTCCCTCTCTTCAACGCCATTTTTACATTCCCTCAAGAACGACCGATGCTTATAAA 1489
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1479 ATTCTTCCCTCTCTTTAACGCCATTTTTACATTCCCTCAAGAACGACCAATGCTTATAAA 1538
Query 1490 AGAGCGATCCTCCGGAATCTACAGACTCTCCTCTTACTACATAGCAAGAACAGTCGGCGA 1549
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1539 AGAGCGATCCTCGGGAATCTACAGGCTCTCCTCTTACTATATAGCAAGAACAGTCGGCGA 1598
Query 1550 TTTACCAATGGAACTCATTCTTCCAACGATCTTTGTCACAATCACATATTGGATGGGAGG 1609
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1599 TTTACCAATGGAACTCATTCTTCCAACGATATTTGTCACAATCACATATTGGATGGGAGG 1658
Query 1610 CCTTAAGCCATCTTTAACCACATTCATCATGACCCTTATGATCGTTCTCTACAATGTTCT 1669
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 TCTTAAGCCATCTTTAACCACATTCATCATGACCCTTATGATCGTTCTCTACAATGTTCT 1718
Query 1670 AGTGGCTCAAGGCGTAGGGTTAGCTCTAGGAGCAATCTTGATGGACGCAAAGAAAGCCGC 1729
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 AGTAGCTCAAGGCGTAGGGTTAGCTCTAGGAGCAATCTTGATGGACGCAAAGAAAGCCGC 1778
Query 1730 GACATTGTCTTCGGTGTTAATGCTAGTGTTCTTACTAGCCGGAGGGTACTATATTCAACA 1789
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1779 GACATTGTCTTCGGTGTTAATGCTAGTGTTCTTACTAGCCGGAGGATACTATATTCAACA 1838
Query 1790 TATTCCGGGTTTTATCGCGTGGTTGAAGTATGTTTCGTTTAGCCACTATTGCTATAAGCT 1849
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1839 TATTCCGGGTTTCATCGCGTGGTTGAAGTATGTTTCGTTTAGCCATTATTGCTATAAGCT 1898
Query 1850 TCTTGTTGGGGTTCAATACACATGGGGTGAGGTTTATGAATGTGGATCAGGGTTGCATTG 1909
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1899 TCTTGTTGGGGTTCAATACACATGGGATGAGGTTTATGAATGTGGGTCAGGGTTGCATTG 1958
Query 1910 TAGTGTTATGGATTATGAAGGGATTAGGAATTTGAGAATCGGGAATATGATGTGGGATGT 1969
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1959 TAGTGTTATGGATTACGAAGGGATTAAGAATTTGAGAATCGGGAATATGATGTGGGATGT 2018
Query 1970 TTTGGCTCTTGCCATTATGTTGCTTCTTTATAGGGTTCTAGCTTACTTAGCTCTAAGAAA 2029
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 2019 TTTGGCTCTTGCCGTTATGTTGCTTCTTTATAGGGTTTTAGCTTACTTAGCTCTAAGGAA 2078
Query 2030 CTTGTGACACCTTTTAATCTGTGT 2053
||||||||||||||||||||||||
Sbjct 2079 CTTGTGACACCTTTTAATCTGTGT 2102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101907106350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5