BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936241
Length=844
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25640.1 | Symbols: | Protein of unknown function, DUF617 |... 1347 0.0
> AT3G25640.1 | Symbols: | Protein of unknown function, DUF617
| chr3:9333719-9334804 FORWARD LENGTH=1086
Length=1086
Score = 1347 bits (729), Expect = 0.0
Identities = 811/850 (95%), Gaps = 7/850 (1%)
Strand=Plus/Plus
Query 1 TTTTGTATATTCATTTAAAGAGATGAAGTCAATCTTAGCCAACACTTCTCTCGATTCTTC 60
|||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 35 TTTTGTATTTTCATTTAAAGAGATGAAATCAATCTTAGCCAACACTTCTCTCGACTCTTC 94
Query 61 ATTCTCTCTCTCAAAACGTTACTTCAATTGgaagaagaagaaagttcaagaagacgacga 120
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 ATTCTCTCTTTCTAAACGTTACTTCAATTGGAAGAAGAAGAAAGTTCAAGAAGACGACGA 154
Query 121 cgaggaagaggaagaagaagaagacgattacaacaacaacgaagagaaAA-TCTTGACCC 179
||| |||||||||||||||||||||||||||||| |||||| ||| |||| |||||||||
Sbjct 155 CGAAGAAGAGGAAGAAGAAGAAGACGATTACAACCACAACG-AGAAAAAAGTCTTGACCC 213
Query 180 GTTTCAATTTCTCCTCTGACCCGACCCGACCGGATCAATTCAATATTCAACACATAATGA 239
||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct 214 GTTTCAATTTCTCCTCTGACCCGACCCGACCGGATCAGTTCAATGCCCAACAGATAATGA 273
Query 240 AGaaaaaaaagaaaaaGACTATCGAAAAGATCCGTTACGCTCTCGGGTTCTCTAACTCGG 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 274 AGAAAAAAAAGAAAAAGACTCTCGAAAAGATCCGTTACGCTCTCGGGTTCTCTAACTCGG 333
Query 300 GTCTGGGTTTCCGGGTCGTGGGTACGTTATTCGGTAACCGTCGTGGACACGTGTACTTCG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GTCTGGGTTTCCGGGTCGTGGGTACGTTATTCGGTAACCGTCGTGGACACGTGTACTTCG 393
Query 360 CCGTACAAGATGACCCGACCCGTTTACCCGCGGTGTTGATCCAGTTACCAACTCCAACGA 419
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 394 CCGTACAAGATGACCCGACTCGTTTACCTGCGGTGTTGATCCAGTTACCGACTCCAACGA 453
Query 420 GCGTTCTTGTCCGTGAGATGGCTTCAGGGCTAGTGAGAATCGCGCTCGAAACGGCTGCGT 479
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GCGTTCTTGTCCGTGAAATGGCTTCAGGGCTAGTGAGAATCGCGCTCGAAACGGCTGCGT 513
Query 480 TTAAGACGGATTCGAAGAAGAAGCTTTTAGAAGAGTCCACGTGGAGAACGTATTGTAACG 539
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 ATAAGACAGATTCAAAGAAGAAGCTTTTAGAAGAGTCCACGTGGAGAACGTATTGTAACG 573
Query 540 GTAAAAAATGTGGATACGCGGCGAGGAAAGAGTGTGGAGAAGCGGAGTGGAAGGTGTTGA 599
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 GTAAAAAATGTGGTTACGCGGCGAGGAAAGAGTGTGGAGAAGCGGAGTGGAAGGTGTTGA 633
Query 600 AGGCGGTTGGGCCCATAACAATGGGTGCTGGAGTTTTACCGGCGGC-A--ACGACGGTGG 656
||||||||||||| |||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 634 AGGCGGTTGGGCCTATAACAATGGGTGCTGGAGTTTTACCGGCGACTACGACGACGGTGG 693
Query 657 ATGAAGAAGGGAATGGAGCGGTTGGGTCCGAAAAAGGTGAGCTCATGTATATGAGAGCCC 716
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 694 ATGAAGAAGGGAATGGAGCGGTTGGGTCCGAAAAAGGTGAACTCATGTATATGAGAGCCC 753
Query 717 GGTTCGAGCGGGTTATCGGGTCGAAAGACTCGGAGGCGTTTTATATGATGAATCCTGATG 776
|||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||
Sbjct 754 GGTTCGAGCGGGTTGTCGGGTCGAGAGACTCGGAGGCGTTTTACATGATGAACCCTGATG 813
Query 777 TGTCAAGTGGTGGACCTGAGCTTAGTGTGTATTTTCTAAGGGTTTAAGGGGAAAAT--GA 834
||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 814 TGTCAAGTGGTGGACCTGAGCTTAGTGTGTATTTTCTAAGGGTTTAATGCGAAAAAAAGA 873
Query 835 TAAGATTAGT 844
||||||||||
Sbjct 874 TAAGATTAGT 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41141766393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5