BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936247
Length=1720
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25680.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2571 0.0
> AT3G25680.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: S-layer
homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G23890.1); Has
2454 Blast hits to 2065 proteins in 355 species: Archae -
39; Bacteria - 284; Metazoa - 1081; Fungi - 166; Plants - 264;
Viruses - 45; Other Eukaryotes - 575 (source: NCBI BLink).
| chr3:9349612-9352427 FORWARD LENGTH=1927
Length=1927
Score = 2571 bits (1392), Expect = 0.0
Identities = 1621/1730 (94%), Gaps = 22/1730 (1%)
Strand=Plus/Plus
Query 1 AACCCTAATTCTCCAGACAAGAAATGAGCTCTTTCTCCGTTAAAAAGTCTCCAACTTCAT 60
|||||||||||||| ||| | |||||||||||||||| ||||||||||| |||| ||| |
Sbjct 61 AACCCTAATTCTCCTGAC-A-AAATGAGCTCTTTCTCAGTTAAAAAGTCCCCAAATTCTT 118
Query 61 CCTTCCTCTTCCCAAAAATCACACCTTTACTTATACGACATCGTCTCACTCTCCCATTAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCTTCCTCTTCCCAAAAATCACACCTTTACTTATACGACATCGTCTCACTCTCCCATTAC 178
Query 121 TCGTTCCTCCTCACAAACCACCAAGATTCCGCATCGTCGCGTCTCTCTCTGGTACTTCAT 180
| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 179 TAGTTCCTCCTCACAAACCACCAAGATTCCGCATCGTTGCTTCTCTCTCCGGTACTTCAT 238
Query 181 GGGTTTCTCAAGCTTCTAAAGAAAAATATGGTGGTTGGGCTCTTGTTGAAGATGAAGAAC 240
|||| |||||||||||| |||| |||||||||||||||||||||| |||||||| | ||
Sbjct 239 GGGTCTCTCAAGCTTCTCAAGACAAATATGGTGGTTGGGCTCTTGCTGAAGATG-A-AA- 295
Query 241 CTCCTTCTCCTCATTCGAAAACTaaaaaaaaGTGGAGGAATGTTGTAATCACTGGTGTTG 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTCCTTCTCCTCATTCGATAACTAAAAAAAAGTGGAGGAATGTTGTAATCACTGGTGTTG 355
Query 301 GATCGTCACTTGCTGTTGTATTAACTACTATTGCTTACTTCTCAATCTCCAGAAAAGGTT 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 356 GATCGTCACTTGCTGTTGTATTAGCTACTATTGCTTACTTCTCAATCTCCAGAAAAGGTT 415
Query 361 TTAGGTTTTGCTTTAGTAATCCATTGCATTATCAGAATGTGGAATTGGATCAGAATGCTA 420
|||||||| |||||||||||| |||||| ||||| |||||||||||||||||||||| ||
Sbjct 416 TTAGGTTTAGCTTTAGTAATCTATTGCAATATCAAAATGTGGAATTGGATCAGAATGATA 475
Query 421 ATGAAGAGAGTGAAACTCTACTCAATGATGAGAGTAATTCTGTTTCTGAGGCTAACTCTG 480
||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct 476 ATGAAGAGAGTGAAACTCTGTTCAATGATGAGAACAATTCTCCTTCTGAGGCTAACTCTG 535
Query 481 AAAGCGTTGACTATGTTTCAGATACTGTTGACACCACATCAACCGGAAAAACCCACCGTG 540
|||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||
Sbjct 536 AAAGCGTTGACTATGTTTCAGATAATGTTGACTCAACATCAACCGGAAAAACTCACCGTG 595
Query 541 TCACCATTCCGGTTGCTGTGGATGCTGCTCAACAAGAAGCAATAGCAGTTTTAAAGAAAC 600
|| | | ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 596 TCGCTACTCCGGTTGCTGTGGATGCTGCTCAACAGGAAGCAATAGCAGTTTTAAAGAAAC 655
Query 601 TAAAGATAAT-TGAAGATGATGTAGTGGCAGACGAGTTGTGTACTAGACGAGAGTATGCT 659
||||||| || |||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 656 TAAAGAT-ATATGAAGATGATATAGTGGCAGACGAGTTGTGTACTAAACGAGAGTATGCT 714
Query 660 AGATGGCTAGTTCGTTCTAATTTGTTATTAGAGAGAAATCCAATGCACAGGATTGTGCCA 719
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 715 AGATGGCTAGTTCGTTCTAATTCGTTATTAGAGAGAAATCCAATGCACATGATTGTGCCA 774
Query 720 GCAGTAGCTTTAGCTGGCTCTTCAATTCCTGCATTTGACGATATAAATACCGCAGACCCT 779
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 775 GCAGTAGCTTTAGCTGGCTCTTCTATTCCTGCATTTGACGATATAAATACCTCAGACCCT 834
Query 780 GACTTCGAGTACATTCAAGCCCTGGCAGAGGCAGGCATTACTTCAAGCAAGCT-ATCCGG 838
||||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||
Sbjct 835 GACTTCGAGTACATTCAAGCCTTGGCAGAGGCAGGCATTACTTCCAGCAAGCTCA-GCGG 893
Query 839 AAAAGATTCTCAAAATGA-TTCGGGAAACAATAATTTCT-ACCCTGAAAGTTTTGTTTCC 896
| ||||||||| |||||| || |||||||| |||||| | | |||||||||||||| |||
Sbjct 894 AGAAGATTCTCGAAATGACTT-GGGAAACAGTAATTT-TAATCCTGAAAGTTTTGTCTCC 951
Query 897 CGACTCGATTTGGTTAACTGGAAAGCTCAATTGGAGTGTGGTTTTCATCCAGAAATTATG 956
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 952 CGACTCGATTTGGTTAACTGGAAAGCTCAGTTGGAGTGTGGTTTCCATCCAGAAATTATG 1011
Query 957 GAAGAGATATCAAGGACAAAGGTAGACTATATAGACACGAAGAATATCAATCCTGATATG 1016
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1012 GAAGAGATATCAAGGACAAAGGTCGACTATATAGACACGAAGAATATCAATCCCGATATG 1071
Query 1017 GCTCTCGGATTCTTCTTGGACTTCTTGACGGGTGACAAGAGTACGATCAGAAACGTTTTT 1076
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1072 GCTCTCGGATTCTTCTTGGACTTCTTGATGGGTGACAAGAGTACGATCAGAAACGTTTTT 1131
Query 1077 GGTAGGATCAAGCGGTTTCAGCCAAATAGACCTGTTACAAAAGCACAAGCAGCTGTAGCA 1136
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1132 GGTAGGATCAAGCGGTTTCAGCCAAATAGACCTGTTACGAAAGCACAAGCAGCTGTAGCA 1191
Query 1137 TTAACAAGCGGTAAAATGGTAAAAGCTATTTCAG-AGGAGCTATCAAGGTTAGAAGCAGA 1195
|||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||
Sbjct 1192 TTAACAAGCGGTAAAATGGTGAAAGCTATCACAGCAG-AGCTATCAAGGTTAGAAGCAGA 1250
Query 1196 GTCGCTCTCGCAGAAAGCTGAGACAGAAGAAATCAGATCCGAGTTGCTA-AAA--GGCGA 1252
||| ||||||||||||||||||||||||||||||||||| || |||||| ||| |||||
Sbjct 1251 GTCCCTCTCGCAGAAAGCTGAGACAGAAGAAATCAGATCGGAATTGCTAGAAAAAGGCGA 1310
Query 1253 AATAAGGCAATTTTGGGATGAGAAGATTCAGGCAGAGAGATCCCGAGGAGTTGAGATGGA 1312
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1311 GATAAGGCAATTTTGGGATGAGAAGATTCAGGCAGAGAGATCCCGAGGATTTGAGATGGA 1370
Query 1313 AGAGCTGCATCTATCCAGAGTTAGTGAATTAGAAGAAGaaaaaaaCACTCAGGAGAAGTG 1372
||||||| |||| || ||||||| |||| ||||||||||||||| |||||||||||||||
Sbjct 1371 AGAGCTGTATCTCTCTAGAGTTAATGAAGTAGAAGAAGAAAAAACCACTCAGGAGAAGTG 1430
Query 1373 GT-TCGCCGAGCGTTTGAAAGAAAAAGCAGCCACAGATTGTCAGAAACAGTTGCTTCATA 1431
|| | || |||||||||||||| |||||||||| ||| |||||||||||||||||| |||
Sbjct 1431 GTCT-GCGGAGCGTTTGAAAGAGAAAGCAGCCATAGACTGTCAGAAACAGTTGCTTAATA 1489
Query 1432 GCTTGAGTGGGGAGATTGATGAGATGTCTCAGAGGCTAATATCCGATAAGTCTGTTTATC 1491
|||||| || ||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1490 GCTTGACTGAGGAGATTGATGAGATGTCTCAGAGGCTAATATCTGATAAATCTGTTTATC 1549
Query 1492 TAACTGAACACAGCAAGTTACAAGAGATGCTAAGTGACTTACAATCTAAACTTGAATCAC 1551
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1550 TGACTGAACACAGCAAGTTACAAGAGATGCTAAGTGACTTACAATCAAAACTTGAATCGC 1609
Query 1552 TTGTCGACAAAAGATCTATCCTAGAAGCTGAAGTCGAAGCTCTTCGGATTCTAAGATCTT 1611
|| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1610 TTATCGACAAAAGATCTATCCTCGAAGCTGAAGTCGAAGCTCTTCGGATACTAAGATCTT 1669
Query 1612 GGATAGAGGATGAAGCTAAGGCAAGCCAAGCCAGAGCTAAGGTTCTCGAAGAAGCTGGAC 1671
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1670 GGATAGAGGATGAAGGTAAGGCAAGCCAAGCCAGAGCTAAGGTTCTCGAAGAAGCGGGAC 1729
Query 1672 GAAGATGGAAATGGAACGACCAA-GCTTAAATCTTTCTTCAGATTGTACA 1720
||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 1730 GAAGATGGAAATGGAACGAT-AATGCTTGAATCTTTCTTCAGATTGTACA 1778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85039723230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5