BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936257
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25760.1 | Symbols: AOC1, ERD12 | allene oxide cyclase 1 | c... 1181 0.0
AT3G25770.1 | Symbols: AOC2 | allene oxide cyclase 2 | chr3:940... 1061 0.0
AT3G25780.1 | Symbols: AOC3 | allene oxide cyclase 3 | chr3:940... 654 0.0
> AT3G25760.1 | Symbols: AOC1, ERD12 | allene oxide cyclase 1 |
chr3:9403883-9405250 FORWARD LENGTH=999
Length=999
Score = 1181 bits (639), Expect = 0.0
Identities = 751/805 (93%), Gaps = 7/805 (1%)
Strand=Plus/Plus
Query 4 TCttt-ttttt-ttGAGCAATGTCTTCTTCTGCAATGTCTTTCCAATCTATCTCCATGAC 61
||||| ||||| |||||||||| |||||||| |||| ||| |||||||||||||||||||
Sbjct 71 TCTTTCTTTTTATTGAGCAATGGCTTCTTCTACAATCTCTCTCCAATCTATCTCCATGAC 130
Query 62 AACTCTCAACAATCTCTCATGTAATCAACAATTTCATCGAAGCTCTCTTCTTGGTTTCTC 121
|||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 131 AACTCTCAACAATCTCTCATATAGTAAACAATTTCATCGAAGCTCTCTTCTTGGTTTCTC 190
Query 122 TAAATCCTTCCAAAATCTTGGTATCTCATCTAATGGTCCAGATTCCTCCTCT-AGATCAA 180
|||||||||||||||| |||||||||||||||| ||||||| |||||||||| || |||
Sbjct 191 TAAATCCTTCCAAAATTTTGGTATCTCATCTAACGGTCCAGGTTCCTCCTCTCCGA-CAA 249
Query 181 GTTTCACTCCCAAGAAGAAACTCACTCCTACTCGAGCTCTCTCCCAGAACTTGGGAAATA 240
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 250 GTTTCACGCCCAAGAAGAAACTCACTCCTACTCGAGCTCTCTCTCAGAACTTGGGAAATA 309
Query 241 CCGAAAACCCCAGACCAAGTAAAGTTCAAGAACTGAGCGTGTACGAAATCAACGATTTAG 300
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 310 CCGAAAACCCCAGACCAAGCAAAGTTCAAGAACTGAGCGTGTACGAAATCAATGATTTAG 369
Query 301 ATAGACACAGCCCAAAAATTCTTAAAAACGCATTCAGCTTTATGTTCGGTCTCGGAGATC 360
|| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 370 ATCGACACAGCCCAAAAATTCTTAAAAACGCATTCAGCTTTAGGTTTGGTCTCGGAGATC 429
Query 361 TTGTCCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGG 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TCGTCCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGG 489
Query 421 CAGGTCTCTGTGTCGTCATCGAACACGTCCC-GA-A-GAAAGGTGAAAGATTCGAAGCTA 477
| |||||||| || || |||||||||||||| || | ||| ||||| |||||||||||||
Sbjct 490 CTGGTCTCTGCGTTGTGATCGAACACGTCCCTGAGAAGAACGGTGATAGATTCGAAGCTA 549
Query 478 CTTATAGCTTCTACTTCGGAGACTATGGACACTTGTCCGTTCAAGGACCGTACTTGACTT 537
| || ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 550 CGTACAGCTTCTACTTCGGAGACTATGGCCACTTGTCCGTACAAGGACCATACTTGACTT 609
Query 538 ACGAGGACTCGTTCCTCGCCATCACTGGTGGCGCTGGAATCTTCGAAGGTGCGTACGGAC 597
||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 610 ACGAGGATTCGTTCCTTGCCATCACTGGTGGCGCTGGAATCTTTGAAGGTGCCTACGGAC 669
Query 598 AAGTTAAGCTTCAACAGATTGTGTATCCGACAAAATTGTTCTACACTTTTTACCTTAAAG 657
| ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||
Sbjct 670 AGGTTAAGCTTCAACAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTATCTTAAAG 729
Query 658 GGTTGGCTAATGATTTGCCATTGGAGCTCACCGGAACGCCGGTACCCCCGTCTAAGGACG 717
| |||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||
Sbjct 730 GATTGGCTAATGATTTGCCACTGGAGCTCATAGGAACTCCGGTACCACCGTCTAAGGACG 789
Query 718 CGGAGCCAGCACCGGAAGCTAAGGCGCTTGAGCCCAGCGGAGTTGTAAGCAACTTTACAA 777
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 790 TGGAGCCAGCACCGGAAGCTAAGGCGCTTAAGCCCAGTGGAGTTGTAAGCAACTTTACAA 849
Query 778 ATTAGTGAATAAAATTAGTCTTATC 802
|||||||||||||||||||||||||
Sbjct 850 ATTAGTGAATAAAATTAGTCTTATC 874
> AT3G25770.1 | Symbols: AOC2 | allene oxide cyclase 2 | chr3:9406873-9407955
FORWARD LENGTH=980
Length=980
Score = 1061 bits (574), Expect = 0.0
Identities = 724/797 (91%), Gaps = 7/797 (1%)
Strand=Plus/Plus
Query 1 TTTTCttttttttttGAGCAATGTCTTCTTCTGCAATGTCTTTCCAATCTATCTCCATGA 60
|||| |||| ||||| | ||||| ||||||| ||| ||||| ||||||| ||||| ||||
Sbjct 84 TTTTATTTTATTTTT-ATCAATGGCTTCTTCAGCAGTGTCTCTCCAATCCATCTCTATGA 142
Query 61 CAACTCTCAACAATCTCTCATGTAATCAACAATTTCATCGAAGCTCTCTTCTTGGTTTCT 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 143 CAACTCTCAACAATCTTTCATGTAATCAACAATTTCATCGAAGCTCTCTTCTTGGTTCCT 202
Query 121 CTAAATCCTTCCAAAATCTTGGTATCTCATCTAATGGTCCAGATTCCTCCTCTAGATCAA 180
|||||||||||||||||||||||||||||||||| ||| |||||| ||||| | |||||
Sbjct 203 CTAAATCCTTCCAAAATCTTGGTATCTCATCTAACGGTTCAGATTTCTCCTATCCATCAA 262
Query 181 GTTTCACTCCCAAGAAGAAACTCACTCCTACTCGAGCTCTCTCCCAGAACTTGGGAAATA 240
|||||||| |||||||||| |||||| || |||||||||||||||| ||| ||| ||||
Sbjct 263 GTTTCACTGCCAAGAAGAACCTCACTGCTTCTCGAGCTCTCTCCCAAAAC--GGG-AATA 319
Query 241 CCGAAAACCCCAGACCAAGTAAAGTTCAAGAACTGAGCGTGTACGAAATCAACGATTTAG 300
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 320 TCGAAAACCCTAGACCAAGCAAAGTTCAAGAACTGAGTGTGTACGAAATCAACGAATTAG 379
Query 301 ATAGACACAGCCCAAAAATTCTTAAAAACGCATTCAGCTTTATGTTCGGTCTCGGAGATC 360
|| |||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 380 ATCGACACAGCCCCAAGATTCTTAAAAACGCATTCAGCTTAATGTTCGGTCTCGGAGATC 439
Query 361 TTGTCCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGG 420
| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 440 TCGTACCATTCACAAACAAACTCTACACAGGCGATCTCAAGAAACGCGTGGGCATCACGG 499
Query 421 CAGGTCTCTGTGTCGTCATCGAACACGTCCC---GAAGAAAGGTGAAAGATTCGAAGCTA 477
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 500 CAGGTCTCTGCGTCGTCATCGAACACGTCCCAGAGAAGAAAGGTGAAAGATTCGAAGCTA 559
Query 478 CTTATAGCTTCTACTTCGGAGACTATGGACACTTGTCCGTTCAAGGACCGTACTTGACTT 537
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 560 CTTATAGCTTCTACTTCGGAGACTATGGCCACTTGTCCGTTCAAGGACCATACTTGACTT 619
Query 538 ACGAGGACTCGTTCCTCGCCATCACTGGTGGCGCTGGAATCTTCGAAGGTGCGTACGGAC 597
||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 620 ACGAGGATTCGTTCCTCGCCATCACTGGTGGTGCTGGAATCTTTGAAGGTGCCTACGGAC 679
Query 598 AAGTTAAGCTTCAACAGATTGTGTATCCGACAAAATTGTTCTACACTTTTTACCTTAAAG 657
| || |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 680 AGGTCAAGCTTCAACAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAG 739
Query 658 GGTTGGCTAATGATTTGCCATTGGAGCTCACCGGAACGCCGGTACCCCCGTCTAAGGACG 717
||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 740 GGTTGGCTAATGATTTGCCGTTGGAGCTCACCGGAACACCGGTACCGCCGTCTAAGGACA 799
Query 718 CGGAGCCAGCACCGGAAGCTAAGGCGCTTGAGCCCAGCGGAGTTGTAAGCAACTTTACAA 777
||||| || |||||||||||||| || ||||| ||||||||| |||| |||| ||| |
Sbjct 800 TAGAGCCGGCGCCGGAAGCTAAGGCACTGGAGCCTAGCGGAGTTATAAGTAACTATACCA 859
Query 778 ATTAGTGAATAAAATTA 794
| || | || ||||||
Sbjct 860 ACTAATTCATGAAATTA 876
> AT3G25780.1 | Symbols: AOC3 | allene oxide cyclase 3 | chr3:9409290-9410567
FORWARD LENGTH=1007
Length=1007
Score = 654 bits (354), Expect = 0.0
Identities = 641/777 (82%), Gaps = 29/777 (4%)
Strand=Plus/Plus
Query 24 TCTTCTTCTGCAATGTCT-TTCCAATCTATCTCCATGACAACTCTCAACAATCTCTCAT- 81
|||||| |||| |||||| || |||| ||||| ||||||||||||||||||||||| |
Sbjct 82 TCTTCTGCTGCTATGTCTCTT-GAATCCATCTCTATGACAACTCTCAACAATCTCTC-TC 139
Query 82 GTAATCAACAATTTCATCGAAGCTCTCTTCTTGGTTTCTCTAA-ATCCTTCCAAAATCTT 140
||||||| |||| ||| || || ||||||||||||||||| || ||| |||||||| |||
Sbjct 140 GTAATCATCAATCTCACCGCAGTTCTCTTCTTGGTTTCTC-AAGATCTTTCCAAAACCTT 198
Query 141 GGTATCTCATCTAATGGTCCAGATTCCTCCTCTAGATCAAGTTTC-ACTCCCAAGAAGAA 199
|| ||||||||||| |||||||||| |||||| ||||||| || ||| | |||||
Sbjct 199 GGAATCTCATCTAACGGTCCAGATTTCTCCTCCCGATCAAG-ATCTACTACTTCCAAGAA 257
Query 200 ACTC-ACTCCTACTCGAGCTCTCTCCCAGAACTT-GGG--A-AATACCGAAAACCCCAGA 254
||| || |||||||||| ||| | ||| || ||| | || ||||||||| |||||
Sbjct 258 CCTCAAC-GTTACTCGAGCTTTCTTCTGGAA-TTGGGGCAAGAAGACCGAAAACTCCAGA 315
Query 255 CCAAGTAAAG-TTCAAGAACTGAGCGTGTACGAAATCAACGATTTAGATAGACACAGCCC 313
|||||| ||| | |||||||| | |||||| || ||||||| ||||||| |||| ||
Sbjct 316 CCAAGT-AAGATCCAAGAACTAAACGTGTATGAGCTCAACGAAGGAGATAGAAACAGTCC 374
Query 314 AAAAATTCTTAAAAAC-GC-ATTCAGCTTTA-TG-TTCGGTCTCGGAGATCTTGTCCCAT 369
| | |||||||| | || | | | | | || ||||||||||||| |||||||
Sbjct 375 AGCAGTTCTTAAACTCGGCAAGAAACCAACAGAGCTT-TGTCTCGGAGATCTCGTCCCAT 433
Query 370 TCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGGCAGGTCTCT 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGGCAGGTCTCT 493
Query 430 GTGTCGTCATCGAACACGTCCC-GAAGAA-AG-G-TGAAAGATTCGAAGCTACTTATAGC 485
| || | ||| ||||||| || ||| || || | ||| ||||||||||||| ||| |||
Sbjct 494 GCGTTTTGATCCAACACGTTCCTGAA-AAGAGCGGTGACAGATTCGAAGCTAGTTACAGC 552
Query 486 TTCTACTTCGGAGACTATGGACACTTGTCCGTTCAAGGACCGTACTTGACTTACGAGGAC 545
|||||||| || |||||||| |||||||| || ||||||| ||||||||||| || |||
Sbjct 553 TTCTACTTTGGTGACTATGGTCACTTGTCTGTACAAGGACAATACTTGACTTATGAAGAC 612
Query 546 TCGTTCCTCGCCATCACTGGTGGCGCTGGAATCTTCGAAGGTGCGTACGGACAAGTTAAG 605
|||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||
Sbjct 613 ACGTTCCTCGCTGTCACTGGTGGCTCTGGAATCTTTGAAGGTGCGTACGGACAGGTTAAG 672
Query 606 CTTCAACAGATTGTGTATCCGACAAAATTGTTCTACACTTTTTACCTTAAAGGGTTGGCT 665
|||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 673 CTTCGTCAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAGGGTTAGCT 732
Query 666 AATGATTTGCCATTGGAGCTCACCGGAACGCCGGT-ACCCCCGTCTAAGGACGCGGAGCC 724
|||||||| || ||||||| || |||||| |||| || || ||| ||||| | | | ||
Sbjct 733 AATGATTTACCGCTGGAGCTTACTGGAACGGCGGTTACGCC-GTCGAAGGATGTGAAACC 791
Query 725 AGCACCGGAAGCTAAGGCGCTTGAGCCCAGCGGAGTTGTAAGCAACTTTACAAATTA 781
|||||||||||||||||| | ||||| || |||||| |||| |||||||| |||||
Sbjct 792 GGCACCGGAAGCTAAGGCGATGGAGCCTAGTGGAGTTATAAGTAACTTTACTAATTA 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39031932219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5