BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936263
Length=331
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25830.1 | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-li... 180 8e-45
AT3G25820.1 | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-li... 180 8e-45
> AT3G25830.1 | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-like
sequence-1,8-cineole | chr3:9447508-9450420 FORWARD LENGTH=1944
Length=1944
Score = 180 bits (97), Expect = 8e-45
Identities = 148/170 (87%), Gaps = 14/170 (8%)
Strand=Plus/Plus
Query 166 GAGATGTGTTGAAGAAAAAAGTGAAGATG-ATGCTTGATGTTGTA-AAGAAGAGCCGTCT 223
||||||||||||||||||||||||||| | |||||||||| || | ||||||||||||||
Sbjct 270 GAGATGTGTTGAAGAAAAAAGTGAAGA-GCATGCTTGATGATG-AGAAGAAGAGCCGTCT 327
Query 224 CGAGCAATTAGAGCTCATGGATGATCTGCAAAAACTTT---TTTCATATCATTTTGAGCT 280
|||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |
Sbjct 328 CGAGCAATTAGAGCTCATCGATGATCTGCAAAAACTTGGGGTTTCGTATCATTTTGAGAT 387
Query 281 ACAAATAAATGAT-----GACATATTTTCATCTTAAAAATGG-AAGAAAT 324
| ||||||||||| |||| || |||||||||||| ||| |||||||
Sbjct 388 AGAAATAAATGATACTTTGACAGATCTTCATCTTAAAA-TGGGAAGAAAT 436
Score = 163 bits (88), Expect = 9e-40
Identities = 125/143 (87%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 24 GCTATTTTTTACCAAAATACTCTTACCCAGTATTTTCATATTCGACGTCCTCACCGTTTC 83
||| || ||||||||||||| || ||||| |||||| | ||||||||||||||||||||
Sbjct 62 GCTCTTATTTACCAAAATACCCTCACCCACCATTTTCGTCTTCGACGTCCTCACCGTTTC 121
Query 84 TTATGCAAGTCCATGACCAAAACGACGCCGGATGCTAGTTCT-GCTGACCTCCGTCGACG 142
|||||||||||||||||||||||||||||||| ||| | || | ||| ||| |||||||
Sbjct 122 GTATGCAAGTCCATGACCAAAACGACGCCGGATACTACT-CTTGTTGAACTCAGTCGACG 180
Query 143 CTCCAGCAACTATCAACCTTCAC 165
|||| | ||||||||||||||||
Sbjct 181 CTCCGGAAACTATCAACCTTCAC 203
> AT3G25820.1 | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-like
sequence-1,8-cineole | chr3:9439246-9442173 FORWARD LENGTH=1959
Length=1959
Score = 180 bits (97), Expect = 8e-45
Identities = 148/170 (87%), Gaps = 14/170 (8%)
Strand=Plus/Plus
Query 166 GAGATGTGTTGAAGAAAAAAGTGAAGATG-ATGCTTGATGTTGTA-AAGAAGAGCCGTCT 223
||||||||||||||||||||||||||| | |||||||||| || | ||||||||||||||
Sbjct 269 GAGATGTGTTGAAGAAAAAAGTGAAGA-GCATGCTTGATGATG-AGAAGAAGAGCCGTCT 326
Query 224 CGAGCAATTAGAGCTCATGGATGATCTGCAAAAACTTT---TTTCATATCATTTTGAGCT 280
|||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |
Sbjct 327 CGAGCAATTAGAGCTCATCGATGATCTGCAAAAACTTGGGGTTTCGTATCATTTTGAGAT 386
Query 281 ACAAATAAATGAT-----GACATATTTTCATCTTAAAAATGG-AAGAAAT 324
| ||||||||||| |||| || |||||||||||| ||| |||||||
Sbjct 387 AGAAATAAATGATACTTTGACAGATCTTCATCTTAAAA-TGGGAAGAAAT 435
Score = 163 bits (88), Expect = 9e-40
Identities = 125/143 (87%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 24 GCTATTTTTTACCAAAATACTCTTACCCAGTATTTTCATATTCGACGTCCTCACCGTTTC 83
||| || ||||||||||||| || ||||| |||||| | ||||||||||||||||||||
Sbjct 61 GCTCTTATTTACCAAAATACCCTCACCCACCATTTTCGTCTTCGACGTCCTCACCGTTTC 120
Query 84 TTATGCAAGTCCATGACCAAAACGACGCCGGATGCTAGTTCT-GCTGACCTCCGTCGACG 142
|||||||||||||||||||||||||||||||| ||| | || | ||| ||| |||||||
Sbjct 121 GTATGCAAGTCCATGACCAAAACGACGCCGGATACTACT-CTTGTTGAACTCAGTCGACG 179
Query 143 CTCCAGCAACTATCAACCTTCAC 165
|||| | ||||||||||||||||
Sbjct 180 CTCCGGAAACTATCAACCTTCAC 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15432198943
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5