BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936269
Length=410
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25810.1 | Symbols: | Terpenoid cyclases/Protein prenyltran... 292 1e-78
AT3G25830.1 | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-li... 279 1e-74
AT3G25820.1 | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-li... 279 1e-74
> AT3G25810.1 | Symbols: | Terpenoid cyclases/Protein prenyltransferases
superfamily protein | chr3:9430767-9433844 FORWARD
LENGTH=1835
Length=1835
Score = 292 bits (158), Expect = 1e-78
Identities = 280/336 (83%), Gaps = 19/336 (6%)
Strand=Plus/Plus
Query 82 GAAGTAAGGTGGTACAAAAGAGGATACAAGCCAAAC-TTGAAGAATACATGCAAAATGCT 140
|||| || |||||||||| |||||||||| |||| | | |||||||||||||||||||||
Sbjct 1302 GAAGCAAAGTGGTACAAAGGAGGATACAAACCAAGCGTGGAAGAATACATGCAAAATGCT 1361
Query 141 TGGATTTCAATTTCTGCCCCGACAATGTTAATTCACATTCACTGTGCTTTCTCTGACGAA 200
||||||||||||||||| || ||||||||||| ||| || ||||||||||||||| | ||
Sbjct 1362 TGGATTTCAATTTCTGCTCCAACAATGTTAATCCACTTTTACTGTGCTTTCTCTGGCCAA 1421
Query 201 ATCTCAATTCAAGTCTTGGGGGTCATTA-TCCCAACACCGGCAACAAGTA-GTCCTGTCC 258
||||| ||||| | |||| | || || ||| |||| | |||||| | ||| ||||
Sbjct 1422 ATCTCGGTTCAAATTTTGGAG-TCTTTGGTCC-AACAAC---AACAAG-ACGTC--GTCC 1473
Query 259 GATGCTCTGCCACCATCCTCCATCTAG--A----CCTTGGAACTTCGACGGATGAATTGG 312
||||||||||||| | |||| ||||| | ||||| ||||||| ||||||||||||
Sbjct 1474 GATGCTCTGCCACTGTGCTCCGTCTAGCTAATGACCTTGCAACTTCGCCGGATGAATTGG 1533
Query 313 CGAGAGGAGATGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGCATCCCAGG 372
|||||||||| |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1534 CGAGAGGAGACGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGTTTCGGAGG 1593
Query 373 AAGAGGCACGTG-AGTAGGTGCAGCAGATGATCAGT 407
|||||||||| | | |||||||||||||| |||
Sbjct 1594 AAGAGGCACGCACAC-ATGTGCAGCAGATGATAAGT 1628
> AT3G25830.1 | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-like
sequence-1,8-cineole | chr3:9447508-9450420 FORWARD LENGTH=1944
Length=1944
Score = 279 bits (151), Expect = 1e-74
Identities = 275/332 (83%), Gaps = 19/332 (6%)
Strand=Plus/Plus
Query 82 GAAGTAAGGTGGTACAAAAGAGGATACAAGCCAAACTT-GAAGAATACATGCAAAATGCT 140
|||| || ||||||||||||||||||||| |||| ||| |||||||| ||||||||||||
Sbjct 1295 GAAGCAAAGTGGTACAAAAGAGGATACAAACCAAGCTTGGAAGAATATATGCAAAATGCT 1354
Query 141 TGGATTTCAATTTCTGCCCCGACAATGTTAATTCACATTCACTGTGCTTTCTCTGACGAA 200
|||||||||||||||||||| ||||| || || ||| || |||| | |||||||||| ||
Sbjct 1355 TGGATTTCAATTTCTGCCCCAACAATATTGATCCACTTTTACTGCGTTTTCTCTGACCAA 1414
Query 201 ATCTCAATTCAAGTCTTGGGGGTCATTATCCCAACACCGGCAACAAGTAGTCCTGTCCGA 260
|||||| ||||| ||| | | | || || |||||||| ||||| | || ||||||
Sbjct 1415 ATCTCAGTTCAAAACTTAGAGA-CTTTGTCTCAACACCGACAACAC--A-TC--GTCCGA 1468
Query 261 TGCTCTGCCACCATCCTCCAT----CTA--GACCTTGGAACTTCGACGGA-TGAATTGGC 313
||||| |||||| | || | | ||| ||||||||||||||| | | |||||||||
Sbjct 1469 TGCTCAGCCACCGTTCTTCGTTTAGCTAACGACCTTGGAACTTCGCCA-ACTGAATTGGC 1527
Query 314 GAGAGGAGATGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGCATCCCAGGA 373
||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1528 GAGAGGAGACGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGCTTCAGAGGA 1587
Query 374 AGAGG-CACGTGAGT-AGGTGCAGCAGATGAT 403
| ||| ||||||| | | ||||| ||||||||
Sbjct 1588 A-AGGGCACGTGA-TCACGTGCATCAGATGAT 1617
> AT3G25820.1 | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-like
sequence-1,8-cineole | chr3:9439246-9442173 FORWARD LENGTH=1959
Length=1959
Score = 279 bits (151), Expect = 1e-74
Identities = 275/332 (83%), Gaps = 19/332 (6%)
Strand=Plus/Plus
Query 82 GAAGTAAGGTGGTACAAAAGAGGATACAAGCCAAACTT-GAAGAATACATGCAAAATGCT 140
|||| || ||||||||||||||||||||| |||| ||| |||||||| ||||||||||||
Sbjct 1294 GAAGCAAAGTGGTACAAAAGAGGATACAAACCAAGCTTGGAAGAATATATGCAAAATGCT 1353
Query 141 TGGATTTCAATTTCTGCCCCGACAATGTTAATTCACATTCACTGTGCTTTCTCTGACGAA 200
|||||||||||||||||||| ||||| || || ||| || |||| | |||||||||| ||
Sbjct 1354 TGGATTTCAATTTCTGCCCCAACAATATTGATCCACTTTTACTGCGTTTTCTCTGACCAA 1413
Query 201 ATCTCAATTCAAGTCTTGGGGGTCATTATCCCAACACCGGCAACAAGTAGTCCTGTCCGA 260
|||||| ||||| ||| | | | || || |||||||| ||||| | || ||||||
Sbjct 1414 ATCTCAGTTCAAAACTTAGAGA-CTTTGTCTCAACACCGACAACAC--A-TC--GTCCGA 1467
Query 261 TGCTCTGCCACCATCCTCCAT----CTA--GACCTTGGAACTTCGACGGA-TGAATTGGC 313
||||| |||||| | || | | ||| ||||||||||||||| | | |||||||||
Sbjct 1468 TGCTCAGCCACCGTTCTTCGTTTAGCTAACGACCTTGGAACTTCGCCA-ACTGAATTGGC 1526
Query 314 GAGAGGAGATGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGCATCCCAGGA 373
||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1527 GAGAGGAGACGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGCTTCAGAGGA 1586
Query 374 AGAGG-CACGTGAGT-AGGTGCAGCAGATGAT 403
| ||| ||||||| | | ||||| ||||||||
Sbjct 1587 A-AGGGCACGTGA-TCACGTGCATCAGATGAT 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19403351114
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5