BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936275
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25860.1 | Symbols: LTA2, PLE2 | 2-oxoacid dehydrogenases ac... 2327 0.0
> AT3G25860.1 | Symbols: LTA2, PLE2 | 2-oxoacid dehydrogenases
acyltransferase family protein | chr3:9460560-9462787 FORWARD
LENGTH=1717
Length=1717
Score = 2327 bits (1260), Expect = 0.0
Identities = 1417/1492 (95%), Gaps = 14/1492 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCTGATTCA-TCAACAATGGCGGTTTCTTCATCTTCGTTTCTATCGACAACTTC 59
|||||||||| | | |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 53 TCTCTCTCTG--TGATTCAACAATGGCGGTTTCTTCTTCTTCGTTTCTATCGACAGCTTC 110
Query 60 ACTCACCAATTCCAAATCCAACATTTCCTTCGCTTCCTCAATATCCCCTTCCCTCCGCAG 119
||| ||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 111 ACTAACCAATTCCAAATCCAACATTTCATTCGCTTCCTCAGTATCCCCATCCCTCCGCAG 170
Query 120 CGTCGTTTTCCGTTCCTCGATTCCGGCGACTTCTCACCGTCGTTCAATGACGGTCCGATC 179
|||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 171 CGTCGTTTTCCGCTCCACGACTCCGGCGACTTCTCACCGTCGTTCAATGACGGTCCGATC 230
Query 180 AAAGATTCGTGAAATTTTCATGCCGGCGTTATCATCAACCATGACGGAAGGTAAAATCGT 239
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 231 TAAGATTCGTGAAATTTTCATGCCGGCGTTATCATCAACCATGACGGAAGGCAAAATCGT 290
Query 240 GTCCTGGATCAAAACGGAAGGCGAGAAACTCGCGAAGGGAGAGAGTGTTGTGGTTGTTGA 299
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 291 GTCATGGATCAAAACAGAAGGCGAGAAACTCGCCAAGGGAGAGAGTGTTGTGGTTGTTGA 350
Query 300 ATCTGATAAAGCAGATATGGATGTTGAAACGTTTTACGATGGTTATCTTGCTGCAATTGT 359
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 351 ATCTGATAAAGCCGATATGGATGTAGAAACGTTTTACGATGGTTATCTTGCTGCGATTGT 410
Query 360 CGTAGGAGAAGGTGAAACAGCTCCGGTTGGTGCTGCGATTGGATTGTTAGCTGAGACTGA 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CGTCGGAGAAGGTGAAACAGCTCCGGTTGGTGCTGCGATTGGATTGTTAGCTGAGACTGA 470
Query 420 AGCTGAGATCGAAGAAGCTAAGACTAAAGCCGCTTCGAAATCTTCTTCTTCTGTGGTTGA 479
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 471 AGCTGAGATCGAAGAAGCTAAGAGTAAAGCCGCTTCGAAATCTTCTTCTTCTGTGGCTGA 530
Query 480 GGCTGTTGTTCCATCTCCTCCTCCGGTTACTTCATCTCCTGCTCCGGCGATTGCTCAAAC 539
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 531 GGCTGTCGTTCCATCTCCTCCTCCGGTTACTTCTTCTCCTGCTCCGGCGATTGCTCAACC 590
Query 540 GGCTCCGGTGACGGCTGTAGCAGATGGTCCGAGGAAGACCGTAGCGACGCCTTATGCTAA 599
||||||||||||||| ||| ||||||||||||||||||| || |||||||| ||||||||
Sbjct 591 GGCTCCGGTGACGGCAGTATCAGATGGTCCGAGGAAGACTGTTGCGACGCCGTATGCTAA 650
Query 600 GAAGCTTGCTAAACAGCATAAGGTTGATATTGGATCCATTGCTGGAACTGGACCGTTTGG 659
||||||||||||||| || ||||||||||||| |||| |||||||||||||||| || ||
Sbjct 651 GAAGCTTGCTAAACAACACAAGGTTGATATTGAATCCGTTGCTGGAACTGGACCATTCGG 710
Query 660 TAGGATTACGGCTTCTGACGTGGAAACGGCGGCTGGAATTGCTCCGTCTAAATCCTCCGT 719
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 711 TAGGATTACGGCTTCTGATGTGGAGACGGCGGCTGGAATTGCTCCGTCCAAATCCTCCAT 770
Query 720 GGCACCACCGCCTCCTCCTCCTA-CTCCGGTGGCGGCTAAAGCTACTACCACCACCACTA 778
|||||||||||||||||||| | |||||||| ||||||||| | | ||||||||||
Sbjct 771 CGCACCACCGCCTCCTCCTCC-ACCTCCGGTGACGGCTAAAG---C-A--ACCACCACTA 823
Query 779 ATTTGCCTCCTCTATTACCTGATTCAAGCATTGTTCCTTTCACAGCAATGCAATCTGCAG 838
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 ATTTGCCTCCTCTGTTACCTGATTCAAGCATTGTTCCTTTCACAGCAATGCAATCTGCAG 883
Query 839 TATCAAAGAACATGATTGAGAGTCTCTCTGTTCCTACATTCCGTGTTGGTTATCCTGTGA 898
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TATCTAAGAACATGATTGAGAGTCTCTCTGTTCCTACATTCCGTGTTGGTTATCCTGTGA 943
Query 899 ACACTGATGCTCTTGATGCACTCTACGAGAAGGTGAAGCCAAAGGGTGTAACAATGACAG 958
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 944 ACACTGACGCTCTTGATGCACTTTACGAGAAGGTGAAGCCAAAGGGTGTAACAATGACAG 1003
Query 959 CTTTATTGGCTAAAGCTGCAGGGATGGCTTTGGCTCAGCATCCTGTGGTGAACGCTAGCT 1018
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1004 CTTTATTAGCTAAAGCTGCAGGGATGGCCTTGGCTCAGCATCCTGTGGTGAACGCTAGCT 1063
Query 1019 GCAAAGATGGGAAGAGTTTTAGTTACAAT-GCTAACATTAACATTGCAGTGGCGGTTGCT 1077
||||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 1064 GCAAAGACGGGAAGAGTTTTAGTTACAATAG-TAGCATTAACATTGCAGTGGCGGTTGCT 1122
Query 1078 ATTAATGGCGGCTTGATTACGCCTGTTCTACAAGATGCAGATAAGTTGGATTTGTACTTG 1137
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 ATCAATGGTGGCCTGATTACGCCTGTTCTACAAGATGCAGATAAGTTGGATTTGTACTTG 1182
Query 1138 TTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAGCCAGAAGCAAGCAACTTCAACCCCAT 1197
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1183 TTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAGCTAGAAGCAAGCAACTTCAACCCCAT 1242
Query 1198 GAATACAACTCTGGAACTTTCACTTTATCGAATCTTGGTATGTTTGGGGTGGATAGATTT 1257
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 1243 GAATACAACTCTGGAACTTTTACTTTATCGAATCTCGGTATGTTTGGAGTGGATAGATTT 1302
Query 1258 GATGCTATTCTTCCGCCAGGACAGGGTGCTATTATGGCTGTTGGAGCGTCAAAGCCAACT 1317
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 GACGCTATTCTTCCGCCAGGACAGGGTGCTATTATGGCTGTTGGAGCGTCAAAGCCAACT 1362
Query 1318 GTAGTTGCTGATAAGGATGGATTCTTCAGTGTAAAAAACACAATGCTAGTGAATGTGACT 1377
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1363 GTAGTTGCTGATAAGGATGGATTCTTCAGTGTAAAAAACACAATGCTGGTGAATGTGACT 1422
Query 1378 GCAGATCATCGCATTGTGTATGGAGCTGACTTGGCTGCTTTTCTTCAAACCTTTGCAAAG 1437
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1423 GCAGATCATCGCATTGTGTATGGAGCTGACTTGGCTGCTTTTCTCCAAACCTTTGCAAAG 1482
Query 1438 ATCATCGAGAATCCAGATAGTTTGACCTTATAAGACAGCCAAGCGAACACGA 1489
||||| |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1483 ATCATTGAGAATCCAGATAGTTTGACCTTATAAGAC-GCCAAGCGAAGACGA 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73493597880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5