BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936276

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25870.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   612    1e-174


> AT3G25870.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G13360.1); 
Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9463316-9464283 
REVERSE LENGTH=968
Length=968

 Score =  612 bits (331),  Expect = 1e-174
 Identities = 479/548 (87%), Gaps = 20/548 (4%)
 Strand=Plus/Plus

Query  12   GGTTAAGCTATGGTGGATTTATTGGAGGAGAGGCTAACTGGGACTGACTCGGTCGGGAAG  71
            |||| |||||||| ||||||||||||||||||||||||| |||||||||| |||||||| 
Sbjct  98   GGTTCAGCTATGGAGGATTTATTGGAGGAGAGGCTAACTCGGACTGACTCTGTCGGGAAT  157

Query  72   AAACGAGTCAGAGACGAGTTAGGTTTCGACTCGCCGGACGTGAAGCGGTTGAGAGATGAT  131
            |||||||||||||||| |||||   ||||||||||||||||||||||||| |||||||||
Sbjct  158  AAACGAGTCAGAGACGGGTTAGACCTCGACTCGCCGGACGTGAAGCGGTTAAGAGATGAT  217

Query  132  TTGCTCGATGACTCGGGGTTTGACCCAGTGATTCAAGATCTTGACTCGGTGATGAAGAGT  191
            ||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct  218  TTGTTCGATGACTCGGGGCTTGACCCAGTGAGTCAAGATCTTGACTCGGTGATGAAGAGT  277

Query  192  TTCGAGGATGAGTTATCGAACA-CGACGGCGAAAGGCTCCGGTGACGGTGAAACTCAGCC  250
            |||||| |||||||||||| || ||||||||   | ||  | |  |||||||||||||||
Sbjct  278  TTCGAGAATGAGTTATCGA-CAACGACGGCGGC-G-CTAAGCTC-CGGTGAAACTCAGCC  333

Query  251  GGATCTTGGGTATCTTTTCGAAGCTTCTGACGACGAGCTTGGTTTACCTCCACCGCCGCC  310
            ||||||||| || ||||||||||||||||| |||||||| ||||| || || ||||   |
Sbjct  334  GGATCTTGGATACCTTTTCGAAGCTTCTGATGACGAGCTGGGTTTGCCACCGCCGCTTAC  393

Query  311  TCTACCGCTGAA---TA-TTCATCCGTCGTGTGAGGAAACGGAGGAGACGGTGACGGAAT  366
             | |||||  ||   |  ||| ||||||||||||||||||||         |||||||||
Sbjct  394  GCCACCGCA-AACGCTTCTTCCTCCGTCGTGTGAGGAAACGG---------TGACGGAAT  443

Query  367  TGGTACGAGCCTCGTCGGATTCATCAGAGGTTGGAGAGTTATGTGGGTTTGAGGATCATG  426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  444  TGGTACGAGCCTCGTCGGATTCATCAGAGGTTGGAGAGTTATGTGGGTTTGAGGATCATG  503

Query  427  TTACGGATTTCGGATCTTGCGATCTGGGTGATGATGGACTTTTTGATTATTCCGATGTGT  486
            ||||||| |||||| |||||||||| ||||||||||| ||||| || |||| ||||| ||
Sbjct  504  TTACGGAGTTCGGACCTTGCGATCTTGGTGATGATGGGCTTTTCGAATATTTCGATGGGT  563

Query  487  GTTTAGATTCTGGTGATTTGTTTTCATGACGGCCGGAGTATTTACCGGCGGAGTAAACAA  546
            |||||||||| || |||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct  564  GTTTAGATTCCGGCGATTTGTTTTCATGGCGGCCGGAGTTTTTACCGGCGGAGTAA-CAA  622

Query  547  TATTCCGG  554
             || ||||
Sbjct  623  CATACCGG  630



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26975736939


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5