BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg936276 Length=562 Score E Sequences producing significant alignments: (Bits) Value AT3G25870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 612 1e-174 > AT3G25870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13360.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9463316-9464283 REVERSE LENGTH=968 Length=968 Score = 612 bits (331), Expect = 1e-174 Identities = 479/548 (87%), Gaps = 20/548 (4%) Strand=Plus/Plus Query 12 GGTTAAGCTATGGTGGATTTATTGGAGGAGAGGCTAACTGGGACTGACTCGGTCGGGAAG 71 |||| |||||||| ||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 98 GGTTCAGCTATGGAGGATTTATTGGAGGAGAGGCTAACTCGGACTGACTCTGTCGGGAAT 157 Query 72 AAACGAGTCAGAGACGAGTTAGGTTTCGACTCGCCGGACGTGAAGCGGTTGAGAGATGAT 131 |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| Sbjct 158 AAACGAGTCAGAGACGGGTTAGACCTCGACTCGCCGGACGTGAAGCGGTTAAGAGATGAT 217 Query 132 TTGCTCGATGACTCGGGGTTTGACCCAGTGATTCAAGATCTTGACTCGGTGATGAAGAGT 191 ||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 218 TTGTTCGATGACTCGGGGCTTGACCCAGTGAGTCAAGATCTTGACTCGGTGATGAAGAGT 277 Query 192 TTCGAGGATGAGTTATCGAACA-CGACGGCGAAAGGCTCCGGTGACGGTGAAACTCAGCC 250 |||||| |||||||||||| || |||||||| | || | | ||||||||||||||| Sbjct 278 TTCGAGAATGAGTTATCGA-CAACGACGGCGGC-G-CTAAGCTC-CGGTGAAACTCAGCC 333 Query 251 GGATCTTGGGTATCTTTTCGAAGCTTCTGACGACGAGCTTGGTTTACCTCCACCGCCGCC 310 ||||||||| || ||||||||||||||||| |||||||| ||||| || || |||| | Sbjct 334 GGATCTTGGATACCTTTTCGAAGCTTCTGATGACGAGCTGGGTTTGCCACCGCCGCTTAC 393 Query 311 TCTACCGCTGAA---TA-TTCATCCGTCGTGTGAGGAAACGGAGGAGACGGTGACGGAAT 366 | ||||| || | ||| |||||||||||||||||||| ||||||||| Sbjct 394 GCCACCGCA-AACGCTTCTTCCTCCGTCGTGTGAGGAAACGG---------TGACGGAAT 443 Query 367 TGGTACGAGCCTCGTCGGATTCATCAGAGGTTGGAGAGTTATGTGGGTTTGAGGATCATG 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 444 TGGTACGAGCCTCGTCGGATTCATCAGAGGTTGGAGAGTTATGTGGGTTTGAGGATCATG 503 Query 427 TTACGGATTTCGGATCTTGCGATCTGGGTGATGATGGACTTTTTGATTATTCCGATGTGT 486 ||||||| |||||| |||||||||| ||||||||||| ||||| || |||| ||||| || Sbjct 504 TTACGGAGTTCGGACCTTGCGATCTTGGTGATGATGGGCTTTTCGAATATTTCGATGGGT 563 Query 487 GTTTAGATTCTGGTGATTTGTTTTCATGACGGCCGGAGTATTTACCGGCGGAGTAAACAA 546 |||||||||| || |||||||||||||| |||||||||| |||||||||||||||| ||| Sbjct 564 GTTTAGATTCCGGCGATTTGTTTTCATGGCGGCCGGAGTTTTTACCGGCGGAGTAA-CAA 622 Query 547 TATTCCGG 554 || |||| Sbjct 623 CATACCGG 630 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26975736939 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5