BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936277

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25882.1 | Symbols: NIMIN-2 | NIM1-interacting 2 | chr3:9470...   497    2e-140


> AT3G25882.1 | Symbols: NIMIN-2 | NIM1-interacting 2 | chr3:9470417-9470950 
REVERSE LENGTH=534
Length=534

 Score =  497 bits (269),  Expect = 2e-140
 Identities = 299/314 (95%), Gaps = 0/314 (0%)
 Strand=Plus/Plus

Query  61   ACGGAAACAGAGAGAAACCGTCGACGGAAGTTGTTCGGACGGTAACGGAGGAAGAGGTGG  120
            |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  117  ACGGTAACAGAGGGAAACCGTCGACGGAAGTTGTTCGGACGGTAACGGAGGAAGAGGTGG  176

Query  121  ATGAGTTTTTCAAGATATTACGGAGAGTACACGTGGCGACACGAACGGTAGCGAAAGCTA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct  177  ATGAGTTTTTCAAGATATTACGGAGAGTACACGTGGCGACACGAACGGTTGCGAAAGTTA  236

Query  181  ACGGCGGTGTTGTTGAACGAGAGTTACCGTCAAAGAAGAGGAAACGGAGTCAGAATCTTG  240
            |||||||||||| |||  ||||||||||||| ||||||||||||||||||||||||||||
Sbjct  237  ACGGCGGTGTTGCTGAGGGAGAGTTACCGTCTAAGAAGAGGAAACGGAGTCAGAATCTTG  296

Query  241  GGTTGAGAAATTCGTTGGATAGTAACGGCGTTCGAGACGGAGAACTCGATGGGATTAATC  300
            |||||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct  297  GGTTGAGAAACTCGTTGGATTGTAACGGCGTTCGAGACGGAGAATTCGATGAGATTAATC  356

Query  301  GGGTCGGGTTACAGGGTTTGGGTTTGGATCTGAATTGTAAACCGGAACCAGACGGCGTTA  360
            |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct  357  GGGTCGGGTTACAGGGTTTGGGTTTGGATCTGAACTGTAAACCGGAACCAGACAGCGTTA  416

Query  361  GTTTGTCGTTGTAG  374
            |||| |||||||||
Sbjct  417  GTTTATCGTTGTAG  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18599067130


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5