BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936279
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25890.1 | Symbols: | Integrase-type DNA-binding superfamil... 1528 0.0
> AT3G25890.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr3:9475575-9477455 FORWARD LENGTH=1781
Length=1781
Score = 1528 bits (827), Expect = 0.0
Identities = 994/1068 (93%), Gaps = 37/1068 (3%)
Strand=Plus/Plus
Query 1 CACACCAAGTGTTCGATAAAATGGCTGAACGAAAGAAACGCTCTTCTGTTCAAACCAATA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 358 CACACCAAGTGTTCGATAAAATGGCTGAACGAAAGAAACGCTCTTCTATTCAAACCAATA 417
Query 61 AACCCCACAAAAAACCCATGAAGAAGAAAACTTTTCAGCTAAATCACCTCCCAGGTTTAT 120
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 418 AACCCAACAAAAAACCCATGAAGAAGAAACCTTTTCAGCTAAATCACCTCCCAGGTTTAT 477
Query 121 CTGAAGATTTGAAGACTATGAGAAAACTCCGTTTCGTTGTGAATGATCCTTACGCTACTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTGAAGATTTGAAGACTATGAGAAAACTCCGTTTCGTTGTGAATGATCCTTACGCTACTG 537
Query 181 ACTATTCATCAAGCGAAGAAGATGAAAGG-GTTCAGAGAAGGAAACGTTATGTCTGTGAG 239
|||| ||||||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct 538 ACTACTCATCAAGCGAAGAAGAAGAAAGGAGT-CAGAGAAGGAAACGTTATGTCTGTGAG 596
Query 240 ATTGATCTTCCTTTCGCTCAAGCCGCTACTCAAGCAGAATCTGAAACCTCAGT-TTGTCA 298
|| |||||||||||||||||||| |||||||||||||||||||||| |||| | ||||||
Sbjct 597 ATCGATCTTCCTTTCGCTCAAGCTGCTACTCAAGCAGAATCTGAAAGCTCA-TATTGTCA 655
Query 299 GGAGAGTAGTAATAATGGTGGAAGCAA-ATCCAAAATCTCAGCTTGTAGCAAAAAGATTT 357
|||||||| |||||||||| |||||| | | |||||||||||||||||||||||| |||
Sbjct 656 GGAGAGTAACAATAATGGTGTAAGCAAGA-CTAAAATCTCAGCTTGTAGCAAAAAGGTTT 714
Query 358 TGA-GCAGCAAAGTGTCGCCGGTCGTTGGACGTTCTTCTAGT---GTCTCGAAGCCTGTT 413
| | ||||||||| || |||||||||||||||||||||| | |||||||||||||||
Sbjct 715 T-ACGCAGCAAAGCATCTCCGGTCGTTGGACGTTCTTCTACTACTGTCTCGAAGCCTGTT 773
Query 414 GGTGTTAGGCAGAGGAAATGGGGTAAATGGGCTGCTGAGATTAGACATCCAATCACTAAA 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 774 GGTGTTAGGCAGAGGAAATGGGGTAAATGGGCTGCTGAGATTAGACATCCAATCACCAAA 833
Query 474 ACTA-GAACTTGGTTGGGTACTTACGAGACGCTTGAACAAGCAGCTAATGCTTATGCTGC 532
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 834 G-TAAGAACTTGGTTGGGTACTTACGAGACGCTTGAACAAGCAGCTGATGCTTATGCTAC 892
Query 533 TAAGAAGCTTGAGTTTGATGCTTTGGCTGCAGCCACTTCTGCCGCTTCCTCTGTTTTGTC 592
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 893 CAAGAAGCTTGAGTTTGATGCTCTGGCTGCAGCCACTTCTGCTGCTTCCTCTGTTTTGTC 952
Query 593 AGATTCAAATGAGTCTGGTTCTATGATCTCAGCTTCAGGGTCTAATGTTGAAGCTGTGTC 652
| | | |||||||||||||||||||||||| | || | | | | | |
Sbjct 953 A-A---A--TGAGTCTGGTTCTATGATCTCAGC--C----TC-A--G--G--G-T----C 988
Query 653 AAGCATTGATCTTGACAAGAAGCTAGTTGATTCGACCCTTGATCCGCAAGCTGGTGAATC 712
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 989 AAGCATTGATCTTGACAAGAAGCTAGTTGATTCGACTCTTGATCAACAAGCTGGTGAATC 1048
Query 713 GAAGAAAGCGAGTTTTGATTTCGACTTTGCAGATCTACAGATTCCTGAATTGGGTTGCTT 772
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1049 GAAGAAAGCGAGTTTTGATTTCGACTTTGCAGATCTACAGATTCCTGAAATGGGTTGCTT 1108
Query 773 CATTGATGAGTCTTTAATCCCAAATGCTTGTGAGCTTGATTTTCTCTTAACAGAAGAGAA 832
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 CATTGATGACTCATTCATCCCAAATGCTTGTGAGCTTGATTTTCTCTTAACAGAAGAGAA 1168
Query 833 CAACAACCAAATGTTGGATGATTACTGCGGCATAGATGATCTGGACATCATTGGTCTTGA 892
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1169 CAACAACCAAATGTTGGATGATTACTGTGGCATAGATGATCTGGACATCATTGGTCTTGA 1228
Query 893 ATGTGACGGTCCAAGCGAACTTCCAGACTATGATTTCTCAGACGTGGAGATCAATCTTGG 952
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1229 ATGTGACGGTCCAAGCGAACTTCCAGACTATGATTTCTCAGATGTGGAGATCGATCTTGG 1288
Query 953 TCTCATTGGAACCACCATTGACAAGTATGCATTCGTTGATCATATCGCAACAACTTCTAC 1012
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 1289 TCTCATTGGAACCACCATTGACAAGTATGCTTTCGTTGATCATATCGCAACAACTACTCC 1348
Query 1013 CACTCCTCTTAATATCGCGTGCCCATAAGTTTTGCAGCTAGGTGTTAT 1060
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 CACTCCTCTTAATATCGCGTGCCCATAAGTTTTGCAGCTAGGTGTTAT 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51907363530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5