BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936280

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25890.1 | Symbols:  | Integrase-type DNA-binding superfamil...   289    7e-78


> AT3G25890.1 | Symbols:  | Integrase-type DNA-binding superfamily 
protein | chr3:9475575-9477455 FORWARD LENGTH=1781
Length=1781

 Score =  289 bits (156),  Expect = 7e-78
 Identities = 181/193 (94%), Gaps = 2/193 (1%)
 Strand=Plus/Minus

Query  1     TCATTTAG-AATAAACACCTAAATGAGAAACAATTGCCTTCAAAAAACCCCACCTGAGAA  59
             |||| ||| || |||| ||||||||||||||||||||||||||||||  |||||||||| 
Sbjct  1668  TCATATAGAAAAAAAC-CCTAAATGAGAAACAATTGCCTTCAAAAAAAACCACCTGAGAT  1610

Query  60    TTACAATTTCGATCTCACCTCTCTATCTTCTTTACAACATCAAAACCATTATGTCAACAA  119
             |||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||
Sbjct  1609  TTACAATTTCGATCACACCTCTCTATCTTCTCCACAACATCAAAACCATTATGTCAACAA  1550

Query  120   AACTTTCTTTAGTAACACCAACACACAAAACTGCATCTGCTTCTATCTTTAGGGTTATTG  179
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1549  AACTTTCTTTAGTAACACCAACACACAAAACTGCATCTGCTTCTATCTTTAGGGTTTTTG  1490

Query  180   CTTCCCCTGAGAT  192
             |||||| ||||||
Sbjct  1489  CTTCCCTTGAGAT  1477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8500928319


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5