BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936283
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25910.1 | Symbols: | Protein of unknown function (DUF1644)... 1493 0.0
> AT3G25910.1 | Symbols: | Protein of unknown function (DUF1644)
| chr3:9489221-9491130 FORWARD LENGTH=1515
Length=1515
Score = 1493 bits (808), Expect = 0.0
Identities = 1041/1150 (91%), Gaps = 30/1150 (3%)
Strand=Plus/Plus
Query 2 TTGTTGTTAGTTCTAGAACATGCCGAAAGAGAGGAAAGAACGGTCGGTATCTCTTGATAA 61
||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 202 TTGTTACTAGTTCCAAAACATGCCGAAAGAGAGGAAAGAACGGTCCGTATCTCTTGATAA 261
Query 62 GTATAGACGATCGCCACTGTGTAGTGAGTCAAG-CTGTGCTTTGAAGCCGAGTGAGAAAC 120
||||| |||||||||||||||| ||||| |||| || |||||||||||||||||||||||
Sbjct 262 GTATAAACGATCGCCACTGTGTTGTGAGGCAAGCCT-TGCTTTGAAGCCGAGTGAGAAAC 320
Query 121 AAGTTAAGGAATGGGAAGAGGCTCGTTGTCCCGTTTGTATGGAACATCCTCACAATGGGA 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 321 AAGTTAAGGAATGGGAAGAGGCTCGTTGTCCTGTTTGTATGGAACATCCTCACAATGGGA 380
Query 181 TTCTTCTCATTTGTTCTTCTTATGAAAACGGTTGTCGACCTTACATGTGCGACACTAGCC 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 381 TTCTTCTCATTTGTTCTTCTTATGAAAATGGTTGTCGACCTTACATGTGCGACACTAGCC 440
Query 241 ATCGGCATTCTAACTGTTTCGATCAGTTCCGCAAAGCTTCTAAAGAGAAACCGTCTTTGT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 441 ATCGGCATTCTAACTGTTTCGATCAGTTCCGCAAAGCTTCTAAAGAGAAACCTTCTTTGT 500
Query 301 CTTTACTTCATGAGGAAGAGGAAAGTAATGAACCAACTGAGATGGAAGATGTAGCTTCTG 360
||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 501 CTTTACTTCGTGAGGAAGAGGAAAGTAATGAACCAACTGAGATGGAAGATGTGGATTCAG 560
Query 361 ACTCAACTGCTGTAAATCTAAGAGGAGAAGCTGCATCTGAGTTAACAGATGTG-AGTTTa 419
|||||||||||||||||||| ||||||||||||||||||| |||||| |||| | ||||
Sbjct 561 ACTCAACTGCTGTAAATCTATTAGGAGAAGCTGCATCTGAGATAACAGTTGTGGA-TTTA 619
Query 420 agagaaggtgagagaggagaagaagaagaagaaggtgagagagga-gaagaagaagtagt 478
|| || |||||||||||||||||||||| ||||| || ||| || |||| || |||||
Sbjct 620 AGTGATGGTGAGAGAGGAGAAGAAGAAGTAGAAGAAGA-AGAAGAAGAAGTAGTAGTAGA 678
Query 479 agaagaagaag--g-aattgtagcaacagaggaagaccaagaaaaaaaCAAACCGCCGAA 535
||||||||||| | ||||||| ||||||| ||||| ||||||||||||||||| | ||
Sbjct 679 AGAAGAAGAAGAAGGAATTGTAACAACAGAAGAAGATCAAGAAAAAAACAAACCACAAAA 738
Query 536 GCTTACTTGCCCGTTATGCCGTGGACATATAAAAGAATGGGTAGTTGTTGAAGCAGCTCG 595
||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 739 GCTTACTTGTCCGTTATGTCGTGGACATATAAAAGAATGGGTAGTTGTTAAAGCAGCTCG 798
Query 596 ATATTTCATGAACTCAAAACATAGAAGCTGTTCGTCCGAGACTTGTGATTTCAGCGGAAC 655
|| |||||||||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 799 ATGTTTCATGAACTCAAAACATAGAAGCTGTTCTTGTGAGACTTGTGATTTCAGTGGAAG 858
Query 656 CTATTCCGATTTGAGAAAGCACGCAAGGCTTCTGCATCCAGGAGTTAGGCCATCAGAAGC 715
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 859 CTATTCCGATCTGAGAAAGCACGCAAGGCTTCTACATCCAGGAGTTAGGCCATCAGAAGC 918
Query 716 AGATCCAGAGAGACAGAGAAGCTGGAGGAGGCTAGAAAGGCAGAGAGATTTAGGGGATTT 775
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 919 AGATCCAGAGAGACAGAGAAGCTGGAGGAGGCTAGAAAGGCAGAGCGATTTAGGGGATTT 978
Query 776 AATTAGCACACTC-AATTCTTCTTTTGGAGGAGAAGAAAGAAGTAACGACAATGGGATTC 834
| ||||||||||| ||| |||||||||||||||| |||| ||||||||| ||||| |||
Sbjct 979 ACTTAGCACACTCCAAT-CTTCTTTTGGAGGAGATGAAATAAGTAACGATGATGGGTTTC 1037
Query 835 TATTTGATGGTA---GCTTGCTTACAGTG-ATCTTTCTCATCCGCGTGTTTAGACCTGAG 890
|||||| || || |||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 1038 TATTTGCTGATACTCGCTTGCTTACAGTGTA-CTTTCTCATCCGCGTGTTTAGACCAGAA 1096
Query 891 TCGAGTGGCTCAAGGAGTAGTAGTAGTAGCTGGTCTGGTGCATCTAGAGCTAGGTCACAG 950
||||||||||||||||||||||| |||||||||| |||||||||||||| ||||
Sbjct 1097 TCGAGTGGCTCAAGGAGTAGTAG------CTGGTCTGGTACATCTAGAGCTAGGACACAT 1150
Query 951 ATAGGTGGGAGAAGAAGGCCA-CATAGATCTCCAGGGCTTTGGGGAGAGAGCTATGAAGG 1009
| | ||||||||||||| | || ||| || || | |||||||||||||||||||||||
Sbjct 1151 ACAAGTGGGAGAAGAAGATCTTCA-AGACCTGCAAGTCTTTGGGGAGAGAGCTATGAAGG 1209
Query 1010 TAATACAGGAACATCATCTAGAGATGAGGAGAATAATATTCAGTCTTCTGATGAACAAGA 1069
|||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 1210 TAATACAGGAACATCACCTAGAGATGAGGAGAATAAT---CAATCTTCTGATGAACAAGT 1266
Query 1070 GTCTGTAACTCGGAGACGACGTCGTTCTAGGAGAAGAGCTATCATtgatgatgacgatga 1129
||||| |||||||||||| ||||||||| |||||| || ||||||||||||| |||||
Sbjct 1267 GTCTGGAACTCGGAGACG---TCGTTCTAGAAGAAGAACTGTCATTGATGATGATGATGA 1323
Query 1130 tgatgatgaA 1139
|| || |||
Sbjct 1324 AGAAGAAGAA 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630225660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5