BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936287
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25950.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensi... 1029 0.0
> AT3G25950.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
domain containing protein | chr3:9496102-9497271 FORWARD
LENGTH=1170
Length=1170
Score = 1029 bits (557), Expect = 0.0
Identities = 713/788 (90%), Gaps = 12/788 (2%)
Strand=Plus/Plus
Query 4 AGTTTCGAAAC-AGAACCATGGAAAC-G-G-CGTTGAGtccttcttcttctccggcgact 59
|||||| |||| |||||||||||||| | | |||| | |||||| |||| || ||| |||
Sbjct 237 AGTTTCAAAACAAGAACCATGGAAACGGCGTCGTTTAATCCTTCGTCTTTTCTGGCTACT 296
Query 60 ctt-ccgtcgttcctcctcctcttcctcttcGTATACATCGTCGGATATTTCCTTA-TCT 117
|| |||||||| ||||||||||||||| |||||||| | |||| ||||||| || | |
Sbjct 297 -TTCCCGTCGTTTCTCCTCCTCTTCCTCGCCGTATACACCATCGGCTATTTCC-TAGTTT 354
Query 118 TCCGTTCATGGAAATC-ATCATCACACTTAGGCGCTAGCTGCTTAATGTCACTCTTCCAC 176
||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 355 TCCGTACATGGAAA-CAATCATCACATTTAGGCGCTAGCTGCTTAATGTCACTCTTCCAC 413
Query 177 GGCACTCCCGCCGTTATAATGGCTTCTCACGCGCTACTCACAACTACACGCGCCTCCGTA 236
|||||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||||
Sbjct 414 GGCACTCCCGCCGTTATAATGGCTTCCCACGCGCTGCTCACAACTCCACGCGCCGACGTA 473
Query 237 CCCTCCTTCGCTTCTCCCAACACTGCCGTGGAATCAACCGTACTCGATTTCAGCATGGCT 296
| ||| |||||||||||||| || ||||||||||||| ||||||||| ||||||||||||
Sbjct 474 CACTCATTCGCTTCTCCCAATACCGCCGTGGAATCAAACGTACTCGACTTCAGCATGGCT 533
Query 297 TATTTCACCGTTGATCTCCTCCATTACCTAATCTTCCTCCCTAACGACTTCATCTTCATC 356
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 534 TATTTCACCGTTGATCTTCTCCATTACTTAATCTTCCTCCCTAACGACTTCATCTTCATC 593
Query 357 CTCCACCACATTGCGACGCTATACGTTTTCGCTACGTGTCGATTCTCTGTCGGTCACGGA 416
||||||||||||||||| |||||||||||||| |||||| ||||| | ||||||||||||
Sbjct 594 CTCCACCACATTGCGACCCTATACGTTTTCGCCACGTGTAGATTCGCCGTCGGTCACGGA 653
Query 417 GCTCACGCGCTTCTCATTCTCTTGATCCTCGCGGAGGCGACGAGCGCGTGTCAGAACGTG 476
||||||| ||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 654 GCTCACGGGCTTCTCCTCCTCTTGATACTCGCGGAGGCGACGAGCGCGTGTCAGAACGTC 713
Query 477 TGGACGATCGCCGGGTATAGAAAACACGACGTCGTTTTAGCGAAGAGAGTGAGAGAGGTT 536
||||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||| ||
Sbjct 714 TGGACGATCACCGGGTATAGAAAAAACGACGTCGCGTTAGCGAGGAGAGTGAGAGAGCTT 773
Query 537 TTGTCTCCGCCGTTTTA-CTTGTTTTACACTGTGGTTCGTGGTTTGGCTGGTCCGGTGGC 595
||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 774 TTGTCTCCGCCGTTTTATCTT-TTTTATACTGTGGTTCGTGGATTGGCTGGTCCGGTGGT 832
Query 596 TTTGTATGATATGGCGGCGTTTTACGGTAGTGGTGCGGCGGGGGGAGTTATTCCACGGTG 655
|||||||||||||||| ||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 833 TTTGTATGATATGGCGACGTTTTACGGTAGCGGTGCGGCGGATGGAGTGGTTCCACGGTG 892
Query 656 GGCTTGGTTATCGTGGCTTGTTGTGATTGGTTTTGCTATTTTTGTTAGTGTTTTGTGGGT 715
|||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 893 GGCTTGGTTATCGTGGCTTGTTGTGATTGGGTTTGCTATTTTGGTTAGTATTTTGTGGGT 952
Query 716 TTTACGTAATTGGGTTGATTGGTTTAGAGAGAAAAACTCTAGCAAGAAATATAAGTGAAC 775
||||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 953 TTTACGTAATTGGCTTGATTGGTTTAGGGAGAATAACTCTAGCAAGAAATACAAGTGAAT 1012
Query 776 TGATTAAT 783
|| |||||
Sbjct 1013 TGTTTAAT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5