BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936288
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23910.1 | Symbols: | ATP binding microtubule motor family ... 385 5e-106
> AT5G23910.1 | Symbols: | ATP binding microtubule motor family
protein | chr5:8068452-8072991 FORWARD LENGTH=2374
Length=2374
Score = 385 bits (208), Expect = 5e-106
Identities = 325/378 (86%), Gaps = 22/378 (6%)
Strand=Plus/Plus
Query 133 GATTCATATAAATTGGACTATTGCTACAAAGAAAACAGAATC-ACAGGTTCAATTCT-AT 190
|||||||||| |||||||||||||||| ||||||| ||| | || ||||||||||| |
Sbjct 157 GATTCATATAGATTGGACTATTGCTACGAAGAAAA-TGAAACTACTGGTTCAATTCTCA- 214
Query 191 CAAAAGAGATAAAGCCTCTTATCTCTACTGTCTTTGAGGGTAAAGATGCTAATGTCATCG 250
| || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 215 CTAAGGAGATAAAGCCTCTTATATCTACTGTCTTTGAGGGTAAAGATGCGAATGTCATCG 274
Query 251 CCCACAGAGCACGAAATTGCGGAAAAACACATCCCATACATGTATTGAAAGCAATCCCAT 310
||||| ||||| ||||| | || |||||||||| ||||| | | | || ||
Sbjct 275 CCCACGGAGCAAGAAATAGTGGTAAAACACATCTGATACA-G----G---G-AA----AT 321
Query 311 TA-AGGGAGCTTGGTTTAACCGTTCTTACAATGTCTGAGATGATATCCATGGCTGAGGAA 369
| ||||| ||||||||| | || |||||||||||||||||| |||||||||||||||||
Sbjct 322 GAGAGGGAACTTGGTTTAGCTGTCCTTACAATGTCTGAGATGTTATCCATGGCTGAGGAA 381
Query 370 AGAGGAGACTCAG-TTTCTGTATCAGTTTACGAGGTTTCTCAAGAAACCGTGTATGACCT 428
||||||||| | | ||| |||||||||||||||||| ||||||||||| |||||||||||
Sbjct 382 AGAGGAGACGC-GATTTTTGTATCAGTTTACGAGGTGTCTCAAGAAACTGTGTATGACCT 440
Query 429 TTTAGACCAAGAGAAGCGAGTGGTT-GCTGTACTGGAAGGTGCACAAGGGAAAATTCAAC 487
||||||||||||||| |||||||| | |||| | |||||||||||||||||||||||||
Sbjct 441 GTTAGACCAAGAGAAGAGAGTGGTTAG-TGTATTAGAAGGTGCACAAGGGAAAATTCAAC 499
Query 488 TAAAGGGACTTCCTCAGG 505
||||||||||| ||||||
Sbjct 500 TAAAGGGACTTTCTCAGG 517
Score = 346 bits (187), Expect = 2e-94
Identities = 234/255 (92%), Gaps = 9/255 (4%)
Strand=Plus/Plus
Query 509 GTGTGATGATACATGTTACCACTGGCAACGCCAATCCAGGCTCCCTTGGGAGGATGAACT 568
||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||
Sbjct 614 GTGTGATGATACATGTTACTACTGGAAACGCCAATTCAGGCTCCCTTGGGAGAATGAACT 673
Query 569 TTCTTGATATGGC--------A-GATTCCAGGAAACAAAACAGTGCTCTAGCTCCTCTAG 619
||||||||||||| | |||||||||||||||||||||||| ||| ||||||||
Sbjct 674 TTCTTGATATGGCAGGATATGAGGATTCCAGGAAACAAAACAGTGCTTTAGGTCCTCTAG 733
Query 620 AGATTGCCAGAGTTAATAAGTTGATATATGCTTTACAGAATGTCATGTATGCTCTCAACG 679
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 734 AGATTGCTAGAGTTAATAAGTCGATATATGCTTTACAGAATGTCATGTATGCTCTAAACG 793
Query 680 GAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGAATGCTGAAAGATTGTT 739
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 794 CAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGTATGCTGAAAGATTGTT 853
Query 740 TAAAAGGATACAACA 754
||||||||| |||||
Sbjct 854 TAAAAGGATCCAACA 868
Score = 244 bits (132), Expect = 9e-64
Identities = 161/175 (92%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 761 CCATGACTAATCCTACTAAGAAGAAGATCTACGGTCTTGAAAGATCTATTTCATTATGCT 820
|||| ||||||||||| |||||||||||| | ||||| || |||||| ||||||||| ||
Sbjct 965 CCATCACTAATCCTACCAAGAAGAAGATCAATGGTCTCGATAGATCTGTTTCATTATCCT 1024
Query 821 CTGCCGCTCAAAGGAGACAGACACCTTTGACTGTGTCTGCTACTTCTAGAAAACAGACAG 880
| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1025 CAGCCGCTCAAAGGAGACAGACACCTTTGACTATGTCTGCTGCTTCTAGAAAACAGACAG 1084
Query 881 TGCTAAGGGGAAATGTGACAGAGAGAAAAGACTAAAATCAACACTGCTGCTTCTG 935
|||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1085 TGCTGAGGGGAAATGTGACAGAGAGAAA-GACTAAAATCAACACTGCTACTTCTG 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5