BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936290
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25980.1 | Symbols: MAD2 | DNA-binding HORMA family protein ... 1088 0.0
> AT3G25980.1 | Symbols: MAD2 | DNA-binding HORMA family protein
| chr3:9503056-9504670 FORWARD LENGTH=1074
Length=1074
Score = 1088 bits (589), Expect = 0.0
Identities = 632/653 (97%), Gaps = 2/653 (0%)
Strand=Plus/Plus
Query 21 ATGGCGTCCAAAACAGTGGCTGCTAAAGATATCATCACTTTACACGGATCTGCGGCCATC 80
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 177 ATGGCGTCCAAAACAGCGGCTGCTAAAGATATCATCACTTTACACGGATCTGCTGCCATC 236
Query 81 GTCAGCGAATTCTTCTGTTACGCAGCGAACAGTATCTTGTATAATCGAGCAGTTTATCCA 140
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 237 GTCAGCGAATTCTTCTGTTACGCTGCGAACAGTATATTGTATAATCGTGCAGTTTATCCA 296
Query 141 GAGGAAAGTTTTGTGAAAGTGAAGAAATATGGACTTCCGATGTTGCTTATTGAAGATGAC 200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAGGAAAGTTTTGTGAAAGTGAAGAAATATGGACTTCCGATGTTGCTTATTGAAGATGAA 356
Query 201 TCCGTCAAATCTTTCATGTCTAATCTCACTTCTCAGATCTCCGAATGGCTTGAAGCTGGG 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCCGTCAAATCTTTCATGTCTAATCTCACTTCTCAGATCTCCGAATGGCTTGAAGCTGGG 416
Query 261 AAGTTGCAGAGAGTAGTGTTAGTGATAATGAGCAAAGCTACTGGTGAAGTTTTGGAGAGG 320
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 417 AAGTTGCAGAGAGTAGTGTTAGTGATTATGAGTAAAGCTACTGGTGAAGTCTTGGAGAGG 476
Query 321 TGGAATTTTCGGATTGAGACTGATAATGAAGTTGTTGACAAAGGTGTGTCGAGGGAGAAA 380
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGGAATTTTCGTATTGAGACTGATAATGAAGTTGTTGACAAAGGTGTGTCGAGGGAGAAG 536
Query 381 AGTGATAAGGAGATCATGAGGGAGATTCAAGCTATTATGAGACAGGTTGCTTCAAGCGTT 440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 537 AGTGATAAGGAGATCATGAGGGAGATTCAAGCTATTATGAGACAGGTTGCTTCAAGTGTT 596
Query 441 ACTTACTTGCCTTGTCTTGATGAAACATGTGTGTTTGATGTATTGGCGTATACGGATACT 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ACTTACTTGCCTTGTCTTGATGAAACATGTGTGTTTGATGTATTGGCGTATACGGATACT 656
Query 501 GATGTGGCTGTTCCATTCACCTGGGTCGAGAGTGACCCGAAGTTGATTGCTAATCCACAG 560
|||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 657 GATGTGGCTGTTCCATTCACTTGGATCGAGAGCGACCCGAAGTTGATTGCTAATCCACAG 716
Query 561 ATGGTTAAGTTACACGGGTTTGATACCAAGATTCACAAAGTCGACACGCTCGTCTCGTAC 620
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 717 ATGGTTAAGTTACACGGTTTTGATACCAAGATTCACAAAGTCGACACGCTTGTCTCATAC 776
Query 621 AAGAATGACGAGTGGGATGAAGAAGAGTAACAGAAGTCGGGACAC--GTATGC 671
||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 777 AAGAACGACGAGTGGGATGAAGAAGAGTAACAGAAGTCGGGACACACGTATGC 829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32451258962
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5