BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936293
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26010.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1596 0.0
> AT3G26010.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:9511901-9513316 FORWARD LENGTH=1416
Length=1416
Score = 1596 bits (864), Expect = 0.0
Identities = 1134/1260 (90%), Gaps = 35/1260 (3%)
Strand=Plus/Plus
Query 30 ACACAAAATCAAACCATACATCTCACAGAGGCGATATGGACGGAGATTATAGCGAGGTTA 89
|||| ||||| ||||||||||||||| || |||||||||||||||||| |||||||||||
Sbjct 7 ACACGAAATCGAACCATACATCTCACTGATGCGATATGGACGGAGATTCTAGCGAGGTTA 66
Query 90 CCATTGAGAATCATCGCTAGATTCAAACT-AGTAAGCAAAACATGGAAATCAACAATCGA 148
||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 67 CCACTGAGAATCATCGCTAGATTCAAA-TCGGTAAGCAAAACATGGAAATCAACAATCGA 125
Query 149 ATCAGTCTACTTCCGCCGTCTCTTTGTGTCTGTGCACCGAAAATCCTCAACCTCGTGGTC 208
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 ATCAGTCTATTTCCGCCGTCTCTTTGTGTCTGTGCACCGAAAATCCTCAACCTCGTGGTC 185
Query 209 GCTAATGTGGTACGGATTAAAAGATCTCATAGGTTTCCATGGATGCGAGACATGGGGTCT 268
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 186 GCTAATGTGGTACGGACAAAAAGATCTCGTAGGTTTCCATGGATGCGAGACATGGGGTCT 245
Query 269 TCCAAAGTCTCTATCTTTTTACATCCCATCGTCTCTTTACATTGTTGCGGCGT-CTTCCC 327
|||||||||||||||||||||||||||||||||||||| ||| | | || || | ||||
Sbjct 246 TCCAAAGTCTCTATCTTTTTACATCCCATCGTCTCTTTGTATTATCGAGG-GTTCCTCCC 304
Query 328 ATGGATTGGTTATGATTTCAGAGTATGATCATGCTTGCTGCTTTGTGGGCAATCCAGTTT 387
||||||||||| |||||||||| ||||| ||| ||| ||||||||||| ||||||||||
Sbjct 305 ATGGATTGGTTTTGATTTCAGAAAATGATGATGATTGTTGCTTTGTGGGTAATCCAGTTT 364
Query 388 TACAACAATGGATCCAAATCCCTCCAGCTCCAGGTT-ATTCTTCTGTGTTAGGTTTGGTG 446
||||||| |||||| ||||||||||| |||||| || | ||||| ||||| |||||||||
Sbjct 365 TACAACAGTGGATCAAAATCCCTCCACCTCCAG-TTCACTCTTCAGTGTTTGGTTTGGTG 423
Query 447 ACTCGCGTGGACGACT-ATGGCTTTGTTTTGGGCTTCAAAGTGGTTAGGTTAGCTGAAAT 505
||||||| ||||| | ||||||||||||||||||||||||| |||| |||||||||| |
Sbjct 424 TCTCGCGTCGACGA-TGATGGCTTTGTTTTGGGCTTCAAAGTCGTTAAGTTAGCTGAAGT 482
Query 506 GCGACCGACGAATAA-TGATGTCTCCG-GTACTTTGAGTGTGTTTTTGTATTCCTCTGAG 563
| ||||||||| | ||||||| | || |||||||||||||| ||||||||||||||
Sbjct 483 AATAGTGACGAATAACT-ATGTCTC-GTGTTCTTTGAGTGTGTTTGTGTATTCCTCTGAG 540
Query 564 ACTGGGATTTGGACTTCTAAGA-TAATTCACTGCCCTTGTCGAATCACCAACACTGCTTC 622
|||||||||||||||| ||||| || |||||||||||| || |||||||||| || |||
Sbjct 541 ACTGGGATTTGGACTTGTAAGACTA-TTCACTGCCCTTATCAAATCACCAACTTTGGTTC 599
Query 623 TTTGACTTTGGATGGTTCAATTTACTTTAACCATCTTAGTGAACCTGGAGTACTCGTAGC 682
||| |||||||||||| | ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 600 TTTCACTTTGGATGGTACCATTTACTTTGACCATCTTAGTGAACCTGGAGTGCTCGTAGC 659
Query 683 TTATGATTTCTACTCTGAA-TCCTCCGATCAATTTCGGGTTATACCTCTCCCTGATCATC 741
|||||||||||| |||||| || |||||||| ||| |||||||||||||||| |||||||
Sbjct 660 TTATGATTTCTATTCTGAAATC-TCCGATCAGTTTTGGGTTATACCTCTCCCGGATCATC 718
Query 742 CGAATCACGGCTTCAATCA-CGACTTCAAAGGTGCTTTGACTACGTCCCACGGAATTT-T 799
||||||||||||||||| | |||||||||||||||||||||||||||||| ||| ||| |
Sbjct 719 CGAATCACGGCTTCAAT-AGCGACTTCAAAGGTGCTTTGACTACGTCCCAAGGA-TTTGT 776
Query 800 CATGTATATCAGAACATTAGCTCAATCCTCGTCTAATGTTTTCAAGGCTTGGAGGTTGAA 859
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 777 CATGTATATCAGAACATTAGCTCAATCTTCGTCTAATGTTTTCAAGGCTTGGAGGTTGAA 836
Query 860 CAATGATTTATCCTGGCAACTTTTGTGGAATATCGCCCTCCCG-CTACTTATCGGTGATT 918
|||||||| | | ||||||||||||||||| |||| ||||||| | ||||||||||||||
Sbjct 837 CAATGATTCAACTTGGCAACTTTTGTGGAAAATCGGCCTCCCGTC-ACTTATCGGTGATT 895
Query 919 ATCTACCTATGGCAATGCATCCATTTGATAGTGACACAGTCTATCTATGGAGTCAAGAGA 978
|| ||||||||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 896 ATGTACCTATGGCAATGCATCCATTTGATAGTGACATTGTCCATCTTTGGAGTCAAGATC 955
Query 979 ATCGTCATGTGGTATCATGTAACTTGCGGACTCAGAAGAATAGAATCCTCGGAGCTGAAG 1038
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ATCGTCATGTGGTATCATGGAACTTGCGGACTCAGAAGAATAGAATCCTCGGAGCTGAAG 1015
Query 1039 ATAATGATGATGATCATCTAGATTGTTTCTTGAACCAGCCTATTTGTGAGGAGTGTATGG 1098
|||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1016 ATAATGATGAAGATCATAAAGATTGTTACTTGAACCAGCCTGTTTGTGAGGAGTGTATGG 1075
Query 1099 ATGAGATATGCAGG-TATAAAGTTTCTGTCAGGTTATTACAA-TTGGTGCTCCCACGGTG 1156
||||||||||| || | ||||| ||||||||||||| ||||| ||| | |||||||||||
Sbjct 1076 ATGAGATATGC-GGCTGTAAAGCTTCTGTCAGGTTACTACAACTTGTT-CTCCCACGGTG 1133
Query 1157 GATGGAATCGGCGCTTTGTCCTCCCCAAGTTGAGATGATAGA-TACATCTTCATTACAT- 1214
||||||||||| || |||||||||||||||||||||||| || |||| |||| || ||
Sbjct 1134 GATGGAATCGGTGCCTTGTCCTCCCCAAGTTGAGATGAT-GAATACAGCTTCGGTA-ATC 1191
Query 1215 TCTTACGTTAAGTCAATGCAAGAGACAA-GAAGAAGGAATTGGAA-C--CAATGATTTCA 1270
|||||||||| |||||||||||||||| || |||||||||| | |||||||||||
Sbjct 1192 TCTTACGTTACTTCAATGCAAGAGACAATGAT-AAGGAATTGGCTTCATCAATGATTTCA 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63202486155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5