BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936295
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26020.4 | Symbols: | Protein phosphatase 2A regulatory B s... 1472 0.0
AT1G13460.1 | Symbols: | Protein phosphatase 2A regulatory B s... 1208 0.0
> AT3G26020.4 | Symbols: | Protein phosphatase 2A regulatory B
subunit family protein | chr3:9513696-9516869 FORWARD LENGTH=2271
Length=2271
Score = 1472 bits (797), Expect = 0.0
Identities = 924/982 (94%), Gaps = 22/982 (2%)
Strand=Plus/Plus
Query 1 TTCTGGTGTTGAGAATAAGAAAACTATGTGGAAACAGATTCTAAGTAAGCTTCCTAACAA 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 374 TTCTGGTGTTGAGAATAAG-AAACTATGTGGAAACAGATTCTAAGTAAGCTTCCCAACAA 432
Query 61 AAAGTCTTCTAAGCACGAACATCGTGGACGTGAACACGGTGGCCATTCTTCTTCATCTTC 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 AAAGTCTTCAAAGCACGAACATCGTGGACGTGAACACGGTGGCCATTCTTCTTCATCTTC 492
Query 121 TCATACTTCTGCTGCCTCTACTTCGAAAAACAGTGATAATGGTACCGGGAAATCAGGGAA 180
||||||||| | |||||||||||| |||| || ||||||||| | | | | |||
Sbjct 493 TCATACTTCAGGTGCCTCTACTTCCAAAAGCACTGATAATGG---C--G----CCGCGAA 543
Query 181 TTCGCATGCTAAGAACGCTTCAGCAGGTGGGAAATCCGCTGCTTCTGACTCGGGTTATAA 240
|||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||
Sbjct 544 ATCGCATGCTAAGAACGCTTCTCCAGCCGGCAAATCCGCTGCTTCTGACTCGGGTTTTAA 603
Query 241 AGATGGGAATCTAAAGAATAGTGGGagcaacagcaacaacagcaacaacagcaacaacaa 300
||||||||||||||||| |||| || | | | |||| | | |||| | | |||||||||
Sbjct 604 AGATGGGAATCTAAAGAGTAGT-GG-G--A-A-CAAC-A-A-CAAC-A-A-CAACAACAA 651
Query 301 cGGAGTCTTTACTCCTTATGAAGCATTGCCGAGTTTTAAAGATGTTCCAAACACGGAAAA 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CGGTGTCTTTACTCCTTATGAAGCATTGCCGAGTTTTAAAGATGTTCCAAACACGGAAAA 711
Query 361 GCAAAACTTGTTCATAAAAAAGTTGAACTTGTGCCGTGTAGTGTTTGATTTCACAGATCC 420
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 712 GCAAAACTTGTTCATTAAAAAGTTGAACTTGTGCCGTGTAGTGTTTGATTTCACGGATCC 771
Query 421 TACAAAGAATATCAAGGAAAAAGAGATTAAGAGGCAGACATTACTGGAGCTTGTGGACTA 480
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 772 TACAAAGAACATCAAGGAAAAAGATATTAAGAGGCAGACATTGCTGGAGCTTGTGGATTA 831
Query 481 TGTGAATTCTCCTAATGGAAAGTTTAGCGAAGTGGGTATCCAAGAAGTCGTTCGGATGGT 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 832 TGTGAATTCTCCTAATGGAAAGTTTAGCGAAGTCGGTATCCAAGAAGTCGTTCGGATGGT 891
Query 541 CTCTGCTAACATATTTAGAACGCTAAATCCTCAACCACGGGAAAATAAAGTTATTGATGC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 892 CTCTGCTAACATATTTAGAACGCTAAATCCTCAACCACGGGAAAATAAAGTTATCGATGC 951
Query 601 CTTAGACCTGGAGGAGGAAGAACCTTCCATGGATCTTGCATGGCCTCACTTGCAGCTTGT 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 952 CTTAGACCTGGAGGAGGAAGAACCTTCCATGGATCTTGCGTGGCCTCACTTGCAGCTTGT 1011
Query 661 GTATGAGCTTTTCTTGAGGTTTGTTGCTTCGCCTGAAACTGACACCAAGTTGGCGAAGAG 720
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1012 GTATGAGCTTTTCTTGAGGTTTGTTGCTTCGCCTGAAACTGACACCAAGCTGGCTAAGAG 1071
Query 721 ATATATAGATCAATCTTTTGTCTTGCGGTTGCTCGATTTATTTGATTCCGAGGATCCTAG 780
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1072 ATATATAGATCAATCTTTTGTCTTGCGGTTACTGGATTTATTTGATTCCGAGGATCCTAG 1131
Query 781 AGAAAGAGATTGTCTGAAAACCATTCTCCATCGGATCTATGGTAAATTTATGGTACACCG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 AGAAAGAGATTGTCTGAAAACCATTCTCCATCGGATCTATGGTAAATTTATGGTACACCG 1191
Query 841 ACCTTTCATCAGGAAATCCATAAACAACATCTTCTATAGGTTTGTTTTCGAAACAGAGAA 900
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1192 ACCTTTCATCAGGAAATCCATTAACAACATCTTCTATAGGTTTGTTTTCGAAACAGAGAA 1251
Query 901 ACATAACGGGATTGCTGAGTTTCTTGAAATCTTGGGTAGTATCATCAATGGATTTGCTCT 960
|||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 1252 ACATAATGGGATTGCTGAGTTTCTAGAAATCTTGGGAAGTATCATCAATGGATTCGCTCT 1311
Query 961 TCCCTTGAAAGACGAGCACAAA 982
||||||||||||||||||||||
Sbjct 1312 TCCCTTGAAAGACGAGCACAAA 1333
Score = 525 bits (284), Expect = 5e-148
Identities = 312/326 (96%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 1274 GTTGCAGAGAGAGCTTTATTCTTATGGAACAACAATCACATTGAGAATCTGATAATGCAG 1333
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 GTTGCAGAGAGAGCTTTATTCTTATGGAACAACAATCACATTGAGAATCTGATAATGCAA 1741
Query 1334 AACCGTAAAGTCATTCTTCCAATTATATTCCCTGCATTGGAGAGAAATGCACAGAAACAT 1393
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 1742 AACCGTAAAGTCATTCTTCCAATTATATTCCCAGCGTTGGAGAGAAACGCACAGAAACAT 1801
Query 1394 TGGAACCAAGCTGTTCATAGCTTGACACTAAACGTACGAAAGATATTTCATGACCTTGAC 1453
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1802 TGGAACCAAGCTGTTCATAGCTTGACACTAAACGTGCGAAAGATATTTCATGACCTTGAC 1861
Query 1454 CCTGAGTTGTTCAAAGAATGCCTTGCTAAGTTCAAGGAAGATGAATCAAAAGCAGCTGAA 1513
|||||||| || ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1862 CCTGAGTTATTTAAAGAATGCCTCGCAAAGTTCAAGGAAGATGAATCAAAAGCAGCTGAA 1921
Query 1514 ACCGAAGCAAAACGTGAAGCCACTTGGAAACGATTGGAAGAACTCGGTGTGCGAAAGGCT 1573
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1922 ACCGAAGCAAAACGTGAAGCCACTTGGAAACGTTTGGAAGAACTCGGAGTGCGAAAGGCT 1981
Query 1574 TCATAAAGTTAGAGCTATAGACAAGA 1599
|||||||||||||| | |||| ||||
Sbjct 1982 TCATAAAGTTAGAGTTGTAGAGAAGA 2007
Score = 351 bits (190), Expect = 9e-96
Identities = 205/212 (97%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 1063 CACACAGTTTGTGGAAAAGGATTGCAAACTTGCTGATACAGTTATAAGAGGATTGTTGAA 1122
|||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1328 CACA-AATTTGTGGAAAAGGATTGCAAACTTGCTGATACGGTTATAAGAGGATTGTTGAA 1386
Query 1123 ATATTGGCCAGTGACAAATAGTTCCAAAGAAGTCATGTTTCTGAATGAGTTGGAGGAAGT 1182
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1387 ATATTGGCCCGTGACAAACAGTTCCAAAGAAGTCATGTTTCTGAACGAGTTGGAGGAAGT 1446
Query 1183 ACTCGAAGCAACTCAGCCACCAGAATTTCAACGGTGCATGGTACCACTGTTTCGCCAAAT 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 ACTCGAAGCAACTCAGCCACCAGAATTTCAACGGTGCATGGTACCACTGTTTCGCCAAAT 1506
Query 1243 AGCCCGATGTTTGAACAGTCTGCATTTTCAGG 1274
||| ||||||||||||||||||||||||||||
Sbjct 1507 AGCTCGATGTTTGAACAGTCTGCATTTTCAGG 1538
> AT1G13460.1 | Symbols: | Protein phosphatase 2A regulatory B
subunit family protein | chr1:4615813-4618329 FORWARD LENGTH=1870
Length=1870
Score = 1208 bits (654), Expect = 0.0
Identities = 1063/1261 (84%), Gaps = 25/1261 (2%)
Strand=Plus/Plus
Query 308 TTT-ACTCCTTATGAAGCATTGCCGA-GTTTTAAAGATGTTCCAAACACGGA-AAAGCAA 364
||| ||||| |||||||||||||| | |||| ||||||||||| || | || ||| ||
Sbjct 440 TTTCACTCCATATGAAGCATTGCC-AGGTTTCAAAGATGTTCCTAATGCAGAGAAA-CAG 497
Query 365 AACTTGTTCAT-AAAAAAGTTGAACTTGTGCCGTGTAGTGTTT-GATTTCACAGATCCTA 422
|||||||| | | |||| | | ||||||| |||| || ||| |||||| | ||||| |
Sbjct 498 AACTTGTTTGTGAGAAAA-CTCAGCTTGTGCTGTGTTGT-TTTCGATTTCTCGGATCCAA 555
Query 423 CAAAGAATATCAAGGAAAAAGAGATTAAGAGGCAGACATTACTGGAGCTTGTGGACTATG 482
| ||||| | |||||||| || |||||| |||||||||| || ||||||||||| ||||
Sbjct 556 CGAAGAACGTTAAGGAAAAGGATATTAAGCGGCAGACATTGCTTGAGCTTGTGGATTATG 615
Query 483 TGA-ATTCTCCTAATGGAAAGTTTAGCG-AAGTGGGTATCCAAGAAGTCGTTCGGATGGT 540
| | ||||||||||||||||||||| | || || | || |||||||| ||| | |||||
Sbjct 616 T-AGCTTCTCCTAATGGAAAGTTTAGTGAAACTGTG-ATTCAAGAAGTGGTTAGAATGGT 673
Query 541 CTCTGCTAACATATTTAGAACGC-TAAATCCTCAACCACGGGAAAATAAAGTTATTGATG 599
|||| ||||||||| ||||| | | ||||||||||| || || ||||||||||||||||
Sbjct 674 TTCTGTTAACATATTCAGAAC-CTTGAATCCTCAACCGCGCGAGAATAAAGTTATTGATG 732
Query 600 CCTTAGACCTGGAGGAGGAAGAACCTTCCATGGATCTTGCATGGCCTCACTTGCAGCTTG 659
| |||||| ||||||| ||||| ||||| ||||||| | | |||||||||||||||||||
Sbjct 733 CGTTAGACTTGGAGGAAGAAGAGCCTTCTATGGATCCTACTTGGCCTCACTTGCAGCTTG 792
Query 660 TGTATGAGCTTTTCTTGAGGTTTGTTGCTTCGCCTGAAACTGACACCAAGTTGGCGAAGA 719
| ||||| || || || || || ||||||| || || || ||||||||| |||| ||||
Sbjct 793 TCTATGAAATTCTCCTGCGGCTTATTGCTTCACCAGAGACAGACACCAAGCTGGCTAAGA 852
Query 720 GATATATAGATCAATCTTTTGTCTTGCGGTTGCTCGATTTATTTGATTCCGAGGATCCTA 779
||| || || ||||||||||||| |||| || |||||||||||||| ||||||||||
Sbjct 853 AATACATTGACCAATCTTTTGTCTCAAGGTTACTTGATTTATTTGATTCAGAGGATCCTA 912
Query 780 GAGAAAGAGATTGTCTGAAAACCATTCTCCATCGGATCTATGGTAAATTTATGGTACACC 839
|||||||||||||||| || ||| |||| ||||| ||||| |||||||||||||| || |
Sbjct 913 GAGAAAGAGATTGTCTTAAGACCGTTCTACATCGCATCTACGGTAAATTTATGGTTCATC 972
Query 840 GACCTTTCATCAGGAAATCCATAAACAACATCTTCTATAGGTTTGTTTTCGAAACAGAGA 899
| |||||||| ||||||||||| || ||||| |||||| ||||||||||||| || ||||
Sbjct 973 GTCCTTTCATAAGGAAATCCATTAATAACATTTTCTATCGGTTTGTTTTCGAGACTGAGA 1032
Query 900 AACATAACGGGATTGCTGAGTTTCTTGAAATCTTGGGTAGTATCATCAATGGATTTGCTC 959
|||| || ||||||||||||||||| || || ||||| ||||||||||||||||||||||
Sbjct 1033 AACACAATGGGATTGCTGAGTTTCTAGAGATTTTGGGAAGTATCATCAATGGATTTGCTC 1092
Query 960 TTCC-CTTGAAAGACGAGCACAAAGTGTTTCTT-GTCCGAGTTTTGATACCTCTCCACAA 1017
| || ||| ||||||||||| ||||||||| || || ||| |||| ||||||| |||||
Sbjct 1093 TGCCGCTT-AAAGACGAGCATAAAGTGTTT-TTGGTTAGAGCTTTGGTACCTCTTCACAA 1150
Query 1018 ACC-AAAATGCTTGCAAATGTATCAGCAACAATTGTCTTATTGTATCACACAGTTTGTGG 1076
||| |||| |||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1151 ACCGAAAA-GCTTGCAAATGTATCATCAGCAATTGTCTTATTGTATCACACAGTTTGTGG 1209
Query 1077 AAAAGGATTGCAAACTTGCTGATACAGTTATAAGAGGATTGTTGAAATATTGGCCAGTGA 1136
|||| ||||||||||| |||||||| |||||||| ||| | | || | |||||| || |
Sbjct 1210 AAAAAGATTGCAAACTCGCTGATACGGTTATAAGGGGACTACTCAAGTCTTGGCCTGTCA 1269
Query 1137 CAAATAGTTCCAAAGAAGTCATGTTTCTGAATGAGTTGGAGGAAGTACTCGAAGCAACTC 1196
|||||||||||||||||||||||||||| || ||| | ||||||||| | ||||||||||
Sbjct 1270 CAAATAGTTCCAAAGAAGTCATGTTTCTAAACGAGCTAGAGGAAGTATTAGAAGCAACTC 1329
Query 1197 AGCCACCAGAATTTCAACGGTGCATGGTACCACTGTTTCGCCAAATAGCCCGATGTTTGA 1256
| ||||| ||||| |||||||| ||||| ||| ||||||||||| | || || |||||||
Sbjct 1330 AACCACCTGAATTCCAACGGTGTATGGTCCCATTGTTTCGCCAAGTTGCTCGGTGTTTGA 1389
Query 1257 ACAGTCTGCATTTTCAGGTTGCAGAGAGAGCTTTATTCTTATGGAACAACAATCACATTG 1316
||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||| || |
Sbjct 1390 ACAGTCTCCATTTTCAGGTTGCAGAAAGAGCTTTGTTCTTATGGAACAACGATCATATCG 1449
Query 1317 AGAATCTGATAATGCAGAACCGTAAAGTCATTCTTCCAATTATATTCCCTGCATTGGAGA 1376
||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 1450 AGAATCTAATAATGCAGAACCGGAAAGTTATTCTTCCAATCATATTCCCTGCATTGGAGA 1509
Query 1377 GAAATGCACAGAAACATTGGAACCAAGCTGTTCATAGCTTGACACTAAACGTAC-GAAAG 1435
|||| | ||||| ||||||||||||||||||||||||||||| | || || | ||| |
Sbjct 1510 GAAACACTCAGAAGCATTGGAACCAAGCTGTTCATAGCTTGACGTTGAATGTGCAGAA-G 1568
Query 1436 ATATTTCATGACCTTGACCCTGAGTTGTTCAAAGAATGCCTTGCTAAGTTCA-AGGAAGA 1494
|| ||| ||||| |||| | |||||||| || || || ||||||||||| | || ||||
Sbjct 1569 ATCTTTAATGACATTGATGCAGAGTTGTTTAAGGATTGTCTTGCTAAGTTTAGAG-AAGA 1627
Query 1495 TGAATCAAAAGCAGCTGAAACCGAAGCAAAACGTGAAGCCACTTGGAAACGATTGGAAGA 1554
||||||||||| |||||||| | ||||||||||| || || |||||||| ||||||||
Sbjct 1628 TGAATCAAAAGAAGCTGAAATTGGCGCAAAACGTGAGGCAACGTGGAAACGGTTGGAAGA 1687
Query 1555 A 1555
|
Sbjct 1688 A 1688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79116058920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5