BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936302
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66330.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1375 0.0
> AT5G66330.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:26500402-26501955 REVERSE LENGTH=1554
Length=1554
Score = 1375 bits (744), Expect = 0.0
Identities = 1074/1234 (87%), Gaps = 19/1234 (2%)
Strand=Plus/Plus
Query 60 TTATCTTCAGCAGAGTCCAAGACTTACTGGGGTGATGTGACAGCTCTCAAAGAGTTGAAA 119
||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| || ||
Sbjct 211 TTATCTTCAGCAGAGTCCAAGACTTTCTGGGGTGACGTGGCAGCTCTCAAAGACTTCAAG 270
Query 120 AACTCAGTAGATGCCAAATCGATGCGTCCAGGCTCTTGTCTGAGTACCTGGGACTTCTCC 179
|||||||| ||||||||||| ||| ||||||||||||| |||||| | ||||| ||||||
Sbjct 271 AACTCAGTGGATGCCAAATCCATGAGTCCAGGCTCTTGCCTGAGTTCTTGGGATTTCTCC 330
Query 180 GTCGATCCCTGCGACAGTGTCTTCAGTGACACATTCAC-T-T--G---CG--G-G-CTCC 228
|||||||||||||||| | | ||||| ||||||||||| | | | || | | ||||
Sbjct 331 GTCGATCCCTGCGACAATATATTCAGCGACACATTCACTTGTGGGTTCCGCTGCGACTCC 390
Query 229 G-C--T-GCGTATCGGGTCGGGTCACGGAGCTTAGTTTTGACCAGGCAGGTTActccggc 284
| | | || ||||||||||||||||||||| ||| | ||||| || |||||||| |||
Sbjct 391 GTCGTTACCGGATCGGGTCGGGTCACGGAGCTCAGTCTGGACCAAGCCGGTTACTCAGGC 450
Query 285 tccctctcctccttctccttcaacctcccttatctccacaccctcgatctctccGGCAAC 344
|||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 451 TCCCTCTCCTCCGTCTCTTTCAACCTTCCTTATCTCCAGACCCTCGATCTCTCCGGCAAC 510
Query 345 TACTTCTCCGGTCCACTCCCCGACTCACTCTCCAATCTCACTCATCTCACCCGCCTCGCC 404
||||||||||||||||| |||||||| |||||||||||||| | ||||||||||||| |
Sbjct 511 TACTTCTCCGGTCCACTTCCCGACTCGCTCTCCAATCTCACCCGTCTCACCCGCCTCACT 570
Query 405 CTCTCCGCAAACTCCTTCTCAGGATCCATACCCGATTCTCTCGGGTCGTTGTCGCTTCTC 464
| |||| ||||||||| || ||||||||||||||||| ||||||| || || ||||
Sbjct 571 GTGTCCGGAAACTCCTTTTCCGGATCCATACCCGATTCAGTCGGGTCAATGACGGTTCTT 630
Query 465 GAGGAGCTCCTCCTCGACGGAAACCATCTCGACGGCTCTGTTCCGGTGAGTTTCAACGGT 524
||||||||| | || ||| | |||| ||| ||||||| |||||| ||| ||||| ||
Sbjct 631 GAGGAGCTCGTGCTAGACAGCAACCGCCTCTACGGCTCCATTCCGGCGAGCTTCAATGGC 690
Query 525 CTTTCCAACCTAAAACGGCTACAGATCCAGGTCAACAACATCTCCGGCGAGTTCCCCGAT 584
||||||| ||| ||||| || | |||||| | ||||||||||||||||| ||||| |||
Sbjct 691 CTTTCCAGCCTGAAACGACTGGAAATCCAGCTAAACAACATCTCCGGCGAATTCCCTGAT 750
Query 585 CTGAGCTCACTCAAAAACCTGTATTTCCTCGACGCTAGCGATAACCGCATCTCGGGTCGG 644
||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||
Sbjct 751 CTGAGCTCACTCAAAAACCTGTATTACCTCGACGCGAGCGATAACCGCATCTCCGGTCGG 810
Query 645 ATCCCGTCATCGTTACCGGAATCTCTAGTCCAAATCTCCATGCGAAACAACCTCATCCAT 704
||||| |||| ||||| |||||| ||||||||||||| ||||||||||||||| ||||
Sbjct 811 ATCCCATCATTTTTACCCGAATCTATAGTCCAAATCTCAATGCGAAACAACCTCTTCCAA 870
Query 705 GGAACCATCCCTCAAAGGTTCAAACTTTTCAACTCTCTCCAAGTGATCGATCTTACCCAC 764
||||| |||||| |||| ||||||||| | || |||||| |||| |||||||||| ||||
Sbjct 871 GGAACGATCCCTGAAAGCTTCAAACTTCTAAATTCTCTCGAAGTAATCGATCTTAGCCAC 930
Query 765 AACAAACTCAGCGGCTCAATCCCATCCTTCATCTTCACTCATCAGTCTCTACAGCAGCTA 824
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 931 AACAAACTCAGTGGCTCAATCCCATCGTTTATCTTCACTCATCAGTCTCTACAGCAGCTA 990
Query 825 ACACTATCCTTCAATGGCTTCACCTCTTTAGATTCACCTTACTATTCCCCCTTGAGTCTC 884
||||| |||||||||||||||||||||||||| ||||| |||||||| |||||| |||||
Sbjct 991 ACACTCTCCTTCAATGGCTTCACCTCTTTAGAGTCACCCTACTATTCTCCCTTGGGTCTC 1050
Query 885 CCCAGCGAGCTCATATCCATCGATCTCAGCAACAACCGGATCCAAGGCGTGTTACCTCTG 944
|||||||||||||||||| | |||||||||||||| | ||||| || | ||||||||||
Sbjct 1051 CCCAGCGAGCTCATATCCGTAGATCTCAGCAACAATCAGATCCTCGGTGCGTTACCTCTG 1110
Query 945 TTCTTTGGTCTATTACCAAAGCTCTCAGCTTTGTCCTTGGAGAACAACAACTTCTTTGGT 1004
||| | ||||||| ||||||||||||||| ||||| || ||||||||||| |||||||||
Sbjct 1111 TTCATGGGTCTATCACCAAAGCTCTCAGCATTGTCGTTAGAGAACAACAAGTTCTTTGGT 1170
Query 1005 ATGATTCCGACCCAATATGTTTGGAAAACCGTATCGTCCGGATCCGAGTTCGCCGGGTTT 1064
|||||||||||||| || || ||||||||||||||| |||||||||| ||||||||||||
Sbjct 1171 ATGATTCCGACCCAGTACGTCTGGAAAACCGTATCGCCCGGATCCGAATTCGCCGGGTTT 1230
Query 1065 CAGAGACTCTTACTAGGCGGGAATTTCTTATTCGGTGTCGTACCGGGTCCTTTGATGGCC 1124
|||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1231 CAGAGACTTTTACTAGGCGGAAATTTCTTATTCGGAGTCGTACCGGGTCCTTTGATGGCG 1290
Query 1125 CTCAAGCCTGGCTCAGCCAACTTGCAGCTCGCCGGAAACTGCTTCTCGTGGTGTCCGGCG 1184
| |||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1291 TTAAAGCCTGGATCAGCGAACGTGCAGCTCGCCGGAAACTGCTTCTCATGGTGTCCGGCG 1350
Query 1185 ACCTTGTTCTTCTGCCAAGGGCAAGAGCAGAGATCTCCTACGGAATGCAGAAAGTTTAGC 1244
|| || |||||||||||||| ||||| ||||||||||| | |||||| ||||||||||||
Sbjct 1351 ACGTTATTCTTCTGCCAAGGACAAGAACAGAGATCTCCGAAGGAATGTAGAAAGTTTAGC 1410
Query 1245 CGTCTTATTCCA-TGATCTTCTCGTTTC-TTGTT 1276
|| | | ||| | |||||||| |||| |||||
Sbjct 1411 CG-CGTCGTCCCGTAATCTTCTC-TTTCCTTGTT 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62901282885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5