BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936303
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26085.2 | Symbols: | CAAX amino terminal protease family p... 1177 0.0
> AT3G26085.2 | Symbols: | CAAX amino terminal protease family
protein | chr3:9530660-9532587 FORWARD LENGTH=1341
Length=1341
Score = 1177 bits (637), Expect = 0.0
Identities = 742/793 (94%), Gaps = 5/793 (1%)
Strand=Plus/Plus
Query 131 TTTGATGTAAGAGCCTCTTCGAGTCGTAAATCACTTAAGAAACTCAGAAGAGAGTCTCAA 190
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||
Sbjct 381 TTTGATGTAAGAGCCTCTTCAAGTCGTAAATCACTTAAGAAACTCAAAAGAGAGTCACAA 440
Query 191 CAAGGTAAAGACATAACCACAAGAAATGTTACAGAAGAAGAAGTTTCTTCTCCAAGATTT 250
||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 441 CAAGGTAAAGACATAGGCTTAAGAAATGTTACAGATGAAGAAGTTTCTTCTCCAAGATTT 500
Query 251 GAGGAAGCTCAAGTTGATAC-TCTAACTTCAAAGGATTCTACTGGTGCTGTTGTTGTTGT 309
|||||||||||||||||| | || |||||||||||| || | | || |||| ||||||
Sbjct 501 GAGGAAGCTCAAGTTGATTCTTC-AACTTCAAAGGACTCCA-T--TGATGTTTTTGTTGC 556
Query 310 TGCTCCTCGAGACAAAGTGCTTCAGGCGTGTACTGTAACTTCTGGTTTAATGGCTGCACT 369
||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 557 TGCTCCTCGAGACAAAGTGCTTCAGGCTTGCACTGTAACTTCCGGTTTGATGGCTGCACT 616
Query 370 AGGTCTGATCATCAGAAAGGCGTCTCATGTTGCTTCGACTCAAGGATTACCGGTTCCTGA 429
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct 617 AGGTCTGATCATCAGAAAGGCGTCTCATGTTGCTTCGACTGAAGGATTACTGGTTCCAGA 676
Query 430 CTGCTCGATAGTTGTACCATTTGGGTTTGAAACTTGGCATCTCGGTTTAATTGCTGGAAT 489
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 CTGCTCTATAGATGTACCATTTGGGTTTGAAACTTGGCATCTCGGTTTAATTGCTGGAAT 736
Query 490 CGTTGTGTTTATATCATCAAGTAGGTTCTTGCTACTTAAATCTTGGCCAGATTTTGCTGA 549
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 CGTTGTGTTTATATCGTCAAGTAGGTTCTTGCTACTTAAATCTTGGCCAGATTTTGCTGA 796
Query 550 TTCTAGTGAAGCAGCAAACCGACAGATTCTTACTTCTCTCGAACCTCTAGATTACCTTGT 609
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 797 TTCTAGTGAAGCAGCAAACCGACAGATTCTCACTTCCCTCGAACCTCTAGATTACCTTGT 856
Query 610 TGTTGCTATGTTACCTGGAATAAGTGAGGAAATGCTCTTTAGAGGTGCATTTATGCCTTT 669
|||||| |||||||| |||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 857 TGTTGCAATGTTACCGGGAATAAGTGAGGAGCTGCTGTTTAGAGGTGCATTAATGCCTTT 916
Query 670 GCTCGGAACCAATTGGAACGGTATTGTAGCGGTTGGACTCATTTTCGGTTTACTTCATCT 729
| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 917 GTTCGGAACTAATTGGAATGGTATTGTAGCGGTTGGCCTCATTTTCGGTTTACTTCATCT 976
Query 730 CGGGAGTGGAAGAAAGTATTCTTTTGCAGTTTGGGCGTCGATTGTCGGTATAATCTACGG 789
|||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 977 CGGGAGCGGAAGAAAGTATTCTTTTGCAGTTTGGGCTTCGATTGTCGGTATAGTCTACGG 1036
Query 790 TTATGCAGCTGTTTTGTCGTCAAGTCTTCTTGTTCCAATGGCCTCGCACGCGCTCAACAA 849
||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||||||
Sbjct 1037 TTATGCAGCTGTTTTGTCGTCGAGTCTTATCGTTCCAATGGCCTCGCACGCACTCAACAA 1096
Query 850 TTTGGTGGGAGGTCTGTTGTGGCGACATAGTGCCAAGATCAAGTCATTGGAGTGAAACAA 909
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 1097 TTTGGTGGGAGGTCTGTTGTGGCGATATAGTTCCAAGATCAAGTCATTGGAGTGAAATAA 1156
Query 910 ACAAAATTTACAA 922
|||||||||||||
Sbjct 1157 ACAAAATTTACAA 1169
Score = 148 bits (80), Expect = 7e-35
Identities = 102/112 (91%), Gaps = 3/112 (3%)
Strand=Plus/Plus
Query 22 GATGGGTTTCATCGCTCTGCAATCTTGGAGCAGAGGATCTTCAACTTCTCTTCACCTCC- 80
|||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 182 GATGGGTTCCATCGCTCTGCAATCTTGGAGCAGAGGAGCTTCAACTTCTCTTCATCTCCT 241
Query 81 --TTCGTCCAGTTGGCTCCAACCCTAAGCTATATGATGCTCCACTAGTACAA 130
|||||||||||||||| |||||||||||||||||||||| | |||||||
Sbjct 242 TTTTCGTCCAGTTGGCTCGAACCCTAAGCTATATGATGCTCGAAGAGTACAA 293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5