BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936345

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motif...   346    6e-95
  AT3G26430.1 | Symbols:  | GDSL-like Lipase/Acylhydrolase superf...   346    6e-95


> AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs) 
family protein with retrovirus zinc finger-like domain 
| chr3:9671517-9676005 FORWARD LENGTH=3033
Length=3033

 Score =  346 bits (187),  Expect = 6e-95
 Identities = 192/194 (99%), Gaps = 1/194 (1%)
 Strand=Plus/Plus

Query  1     GATGTG-TCTCTATTTTGGCCCTAAACTCAAGAGTCGACTATGTTCCTAAAGTGCTCTCT  59
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  945   GATGTGTTCTCTATTTTGGCCCTAAACTCAAGAGTCGACTATGTTCCTAAAGTGCTCTCT  1004

Query  60    CTCCTTTTGATATGTTGATCCCTATGGAAACCTTGTGCTTGGTTGGTTTGAGACAATTTG  119
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1005  CTCCTTTTGATATGTTGATCCCTATGGAAACCTTGTGCTTGGTTGGTTTGAGACAATTTG  1064

Query  120   AGATGTGCTACTTTATGCTTATCGTAATGAATGCGTGGGTTATCCCCCAACACCAAATTT  179
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1065  AGATGTGCTACTTTATGCTTATCGTAATGAATGCGTGGGTTATCCCCCAACACCAAATAT  1124

Query  180   GCAAAAGCCTCAGG  193
             ||||||||||||||
Sbjct  1125  GCAAAAGCCTCAGG  1138


> AT3G26430.1 | Symbols:  | GDSL-like Lipase/Acylhydrolase superfamily 
protein | chr3:9671517-9675927 FORWARD LENGTH=3162
Length=3162

 Score =  346 bits (187),  Expect = 6e-95
 Identities = 192/194 (99%), Gaps = 1/194 (1%)
 Strand=Plus/Plus

Query  1     GATGTG-TCTCTATTTTGGCCCTAAACTCAAGAGTCGACTATGTTCCTAAAGTGCTCTCT  59
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  942   GATGTGTTCTCTATTTTGGCCCTAAACTCAAGAGTCGACTATGTTCCTAAAGTGCTCTCT  1001

Query  60    CTCCTTTTGATATGTTGATCCCTATGGAAACCTTGTGCTTGGTTGGTTTGAGACAATTTG  119
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1002  CTCCTTTTGATATGTTGATCCCTATGGAAACCTTGTGCTTGGTTGGTTTGAGACAATTTG  1061

Query  120   AGATGTGCTACTTTATGCTTATCGTAATGAATGCGTGGGTTATCCCCCAACACCAAATTT  179
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1062  AGATGTGCTACTTTATGCTTATCGTAATGAATGCGTGGGTTATCCCCCAACACCAAATAT  1121

Query  180   GCAAAAGCCTCAGG  193
             ||||||||||||||
Sbjct  1122  GCAAAAGCCTCAGG  1135



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11812921015


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5