BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936357
Length=3032
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family prote... 774 0.0
> AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protein
| chr1:12099482-12104601 REVERSE LENGTH=4066
Length=4066
Score = 774 bits (419), Expect = 0.0
Identities = 491/526 (93%), Gaps = 4/526 (1%)
Strand=Plus/Plus
Query 998 AGGAAAATTACGTG--CTCCCACTTTATGCGATGCTATCTCCAGCTGCACAGCTCCGAGT 1055
|||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 2028 AGGAAAATTACGTGTTCTTCCACTTTATGCTATGCTATCTCCAGCTGCACAGCTTCGAGT 2087
Query 1056 GTTCGAGGATGTTGAGAAAGAAGAAAGACTTGTGGTCGTGGCAACAAATGTAGCGGAAAC 1115
||| ||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 2088 GTTTGAGGAAGTTGAGAAAGAAGAAAGACTTGTGGTTGTGGCGACTAATGTAGCGGAAAC 2147
Query 1116 TTCTCTGACTATTTCAGGTATAAAGTATGTGGTTGATTCAGGTCGGGTTAGAGTGAAGAA 1175
||||||||||||| | ||||||||||||||||||||| |||||||||||| ||| |||||
Sbjct 2148 TTCTCTGACTATTCCTGGTATAAAGTATGTGGTTGATACAGGTCGGGTTAAAGTAAAGAA 2207
Query 1176 TTATGATTCTAAGACTGGTATGGAAAGTTATGAGGTAGAATGGATTAGTCAAGCTTCGGC 1235
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2208 TTATGATTCTAAGACTGGTATGGAAAGTTATGAGGTAGATTGGATTAGCCAAGCTTCGGC 2267
Query 1236 TAGTCAACGTGCTGGAAGAGCTGGACGAACTGGACCCGGTCACTGTTATCGTCTCTATTC 1295
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2268 TAGTCAACGAGCTGGAAGAGCTGGACGAACTGGACCTGGTCACTGTTATCGTCTCTATTC 2327
Query 1296 ATCTGC-GATTTTTAGCAATATATTTGAGGAGTCTTCACCTCCTGAAATCACGAAAGTTC 1354
|||||| | |||||||||||||||||||||| ||||| | ||||||||||| ||||||||
Sbjct 2328 ATCTGCAG-TTTTTAGCAATATATTTGAGGAATCTTCGCTTCCTGAAATCATGAAAGTTC 2386
Query 1355 CTGTTGATGGAATCGTTCTTCTCATGAAGTCTATGAACATTTCAAAGGTTGAGAATTTCC 1414
||||||||||| || ||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 2387 CTGTTGATGGAGTCATTCTTCTCATGAAATCTATGAACATTCCAAAGGTTGAGAATTTCC 2446
Query 1415 CATTTCCAACTCCGCCTGAGCCATCAGCTATTAGAGAAGCAGAAAGATGCTTAAAAGCTT 1474
| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2447 CGTTTCCAACTCCGCCTGAGCCATCAGCTATTAGAGAAGCAGAACGATGCCTAAAAGCTT 2506
Query 1475 TAGAGGCTCTTGACAGCAACGGACGGTTAACACCATTCGGAAAGGC 1520
|||||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct 2507 TAGAGGCTCTAGACAGCAACGGAGGGTTAACACCATTAGGAAAGGC 2552
Score = 745 bits (403), Expect = 0.0
Identities = 528/589 (90%), Gaps = 6/589 (1%)
Strand=Plus/Plus
Query 1526 ATTACTCCCGGGCGAATCTTGTCCTTGGATATGCGGTTGCAGCAGTAGCCGCGTTGAGCT 1585
||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2630 ATTACTCACGCGCGAATCTCATCCTTGGATATGCGGTTGCAGCAGTAGCCGCGTTGAGCT 2689
Query 1586 TACCAAACCCTTTGACAATGCAGTTCGAAGGAGAGAAGAAAACCGAGTTTGAAGATGCTG 1645
||||||||||||||| |||| |||| |||||||||||||||| ||||| |||||||||
Sbjct 2690 TACCAAACCCTTTGATAATGGAGTTTGAAGGAGAGAAGAAAAACGAGTCCAAAGATGCTG 2749
Query 1646 GCAAAATCGTCAAGCAAGAAGATAAACAATGGAGAAAGGAGCGGAAAGAGAAGATCAAAG 1705
||||| |||||| ||||||||||||||| ||| |||||| |||||||||||||| ||||
Sbjct 2750 ACAAAACCGTCAAACAAGAAGATAAACAACGGAAAAAGGATCGGAAAGAGAAGATTAAAG 2809
Query 1706 CTGCTCAGGACAGATTTTCCAACCAAAGCAGCGATGGTTTGACTGTTGCTTACGCATTGC 1765
|||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct 2810 CTGCTCGGGACAGATTTTCCAACCCGAGCAGCGATGCTTTGACTGTAGCTTACGCATTGC 2869
Query 1766 ATTCCTTTGAGGTCTGGGAGAATGGCGCGGGCTTCTGCTAGTCGAACGGAATGCATTTGA 1825
||||||||||||||| |||||||||| |||||||||| || |||| || |||||||||
Sbjct 2870 ATTCCTTTGAGGTCTCGGAGAATGGCATGGGCTTCTGCGAGGCGAATGGGTTGCATTTGA 2929
Query 1826 AGACCATGGACGAAATGTCTAAGCTCAAAGATCAGCTTTTGCGAATTGTTTTCAGCTGTT 1885
||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 2930 AGACCATGGACGAGATGTCTAAGCTCAAAGATCAGCTTTTGCGACTTGTTTTCAACTGTT 2989
Query 1886 GTAAGCCTTCTGAAACCGAAGATGG-TTTCTCATGGACTCATGGGACTATACAAGACGTA 1944
||||||| || ||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 2990 GTAAGCCCTCCGAAACCGAAGACAGCTTT-TCATGGACTCATGGGACTATACAAGACGTA 3048
Query 1945 GAGAAGTCATGGAGAATCACCGGATCGTCTTCCTCAAGAAACCCGCT-TT-TACAGAATG 2002
||||||||||||||||||||| |||| ||||||||| |||||| || || ||||||| |
Sbjct 3049 GAGAAGTCATGGAGAATCACCACATCGACTTCCTCAA-AAACCC-CTCTTCTACAGAACG 3106
Query 2003 AAGAAGAGCTGTTAGGAGAAGCCATATGTACGGGATGGGCTGACCGAGTAGCTAGAAAGA 2062
||||||| ||||||||||||||||||||| |||||||||| ||||| ||||| |||||||
Sbjct 3107 AAGAAGAACTGTTAGGAGAAGCCATATGTGCGGGATGGGCAGACCGTGTAGCCAGAAAGA 3166
Query 2063 CTAAAGCGACGGAATACCAAGCCTGCACGTTTCAAGAACCAGTTTTCTT 2111
| | |||||| ||||||||||| || || |||||||||| ||||||||
Sbjct 3167 CCAGAGCGACAGAATACCAAGCATGTGCGGTTCAAGAACCTGTTTTCTT 3215
Score = 688 bits (372), Expect = 0.0
Identities = 451/489 (92%), Gaps = 6/489 (1%)
Strand=Plus/Plus
Query 2542 GAGCTCCTACTCACCAACAGACCGTACATGCACGGAGCGACACGGGTGAAGCCGGAATGG 2601
||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| ||||||
Sbjct 3268 GAGCTCCTACTCACCAACAGACCATACATGCACGGAGCGACTCGGGTGAGGCCAGAATGG 3327
Query 2602 CTGGTGAAGCACTCAAAGTCTCTCTGCGTTTTCTCCGCACCACTCAAGGACCCAAAACCA 2661
|||||||||||| |||||||||||||||| ||||| ||||| ||||||||||| ||||||
Sbjct 3328 CTGGTGAAGCACGCAAAGTCTCTCTGCGTGTTCTCTGCACCGCTCAAGGACCCGAAACCA 3387
Query 2662 TATTACTCGAGTGAGGGGGATAGAGTTTTGTGCTGGATCGTTCCGAGTTTTGGTCCTTAT 2721
|||||||| ||||||| ||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 3388 TATTACTCAAGTGAGGAGGATAGAGTTTTGTGCTGGGTCGTTCCGAGTTTCGGTCCTCAT 3447
Query 2722 AATTGGGAGCTTCCGGCTCACAGTGTGGCAATAACAGAGGATAGAGACCGAGCAGCGGTT 2781
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3448 AATTGGGAACTTCCGGCTCACAGTGTGGCAATAACAGAGGATAGAGACCGAGCAGCGGCT 3507
Query 2782 TTCGGATGCGCTTTGCTTCAAGGAGAGGTATTGCCTTGTTTAAAAAGCGTGAGGG-TGTT 2840
|||||||||||||||||||||||||||||||| ||||||| |||||| | |||| | ||
Sbjct 3508 TTCGGATGCGCTTTGCTTCAAGGAGAGGTATTAACTTGTTTGAAAAGCTTCAGGGCT-TT 3566
Query 2841 AATGGCTGGGAAACCTGAAATGTTGTTGGAAAGAGAAGCTTGGGGTTTAGAAAGAGTTGG 2900
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3567 GTTGGCTGGGAAACCTGAAACGTTGTTGGAAAGAGAAGCTTGGGGTTTAGAAAGAGTTGG 3626
Query 2901 GAGTTTGGTGA-GAGTTTTGACAGAGAAGAAGATTGATAGTTTGGAGACTTTGAGAAAGA 2959
||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 3627 GAGTTTGGTGATG-GTTTTGACAGAGAAGAAGATTGATACTTTGGAGAGTTTGAGAAAGA 3685
Query 2960 GCTGGGAACAGAATCCGAATGTGCTTTATGCGGAGATTGAAGCTTGGTTTTA-AAGAAAG 3018
||||||||||||||||||||||||||| | |||||||||| ||||||| | || ||||
Sbjct 3686 ATTGGGAACAGAATCCGAATGTGCTTTATTCAGAGATTGAAGTTTGGTTTCAGAA-AAAG 3744
Query 3019 TTTCGTCAT 3027
|||||||||
Sbjct 3745 TTTCGTCAT 3753
Score = 518 bits (280), Expect = 2e-145
Identities = 361/400 (90%), Gaps = 5/400 (1%)
Strand=Plus/Plus
Query 597 TGGTCAAAGAGAAGTTGACTATTTATGCGACAAGTTACGTAAGTCTTCAAAGGAACTTGT 656
||| || |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1569 TGGGCAGAGAGAAGTTGACTATTTATGTGAGAAGTTACGTAAGTCTTCAAAGGAACTTGT 1628
Query 657 AGGTCAAGCTGCTTTAAGAGATGCTTCCGTCAAGAAGAAATGCGATGATGGTTCATTTGT 716
| |||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1629 TGTTCAAGCTGCTAAAAGAGATGCTTATGTGAAGAAGAAATGCGATGATGGTTCATTTGG 1688
Query 717 TGGTGTTGACATGAAGGAGATTGCTGAAGCATTTGATGATGACTACAACAGTCAAAATTA 776
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1689 TGGTGTTGACATGAAGGAGATTGCTGAAGCATTTGATGATGACTCCAACAATCAAAATTC 1748
Query 777 CAGGTTTAACTCGCATGGAGATGATCCTTTTGAAATTGGTGATGGTAACTATGATGAT-- 834
|||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 1749 CAGGTTTAGCTCGCATGGAGAAGATCCTTCTGATATTGGTGATGGTAACTATGATGATGA 1808
Query 835 TTT-GAAGAAGAAGACATCTATGAGTCTGATGATGACAGCGACTGGGAAATTGTTGATGA 893
||| ||||| |||||||| |||||||||||||| ||||| |||||||||| |||||||||
Sbjct 1809 TTTTGAAGAGGAAGACATGTATGAGTCTGATGAAGACAGGGACTGGGAAACTGTTGATGA 1868
Query 894 CGGCTTTGGAAGTTCATTGGTAGAGGAAGGGAAGCATGATGCTCTTCGAGAAACGTTTAA 953
|||||||| ||||||||| |||||||||||||||| ||||||||| |||| | |||||||
Sbjct 1869 CGGCTTTGCAAGTTCATTTGTAGAGGAAGGGAAGCTTGATGCTCTCCGAGCAGCGTTTAA 1928
Query 954 TGCTTTGGAAGA-AAATAATGGACCCAAATCTGCTGAGCC 992
|||||||| ||| ||| |||||| || ||||||||||||
Sbjct 1929 TGCTTTGGCAGACAAA-AATGGATCCGTATCTGCTGAGCC 1967
Score = 499 bits (270), Expect = 6e-140
Identities = 325/350 (93%), Gaps = 10/350 (3%)
Strand=Plus/Plus
Query 259 CAGAAGGATTTCTTATTGAGGCGTTACTCTGTGATTATTCTCGATGAAGTCCATGAAAGA 318
||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1153 CAGAATGACTTCTTATTGAGGCGTTACTCTGTGATTATTCTCGATGAAGCCCATGAAAGA 1212
Query 319 AGCTTGAACACAGACATTCTCATTGGGATGCTCACTCGAGTCATTAAAATCCGACAGGAA 378
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1213 AGCTTGAACACAGACATTCTAATTGGGATGCTCACTCGAGTCATCAAAATCCGACAGGAA 1272
Query 379 TACTACGAGGAACAACATAAGAGTCTTCAATCTGGAGG-ATTAGTAGA-C-C--AAT--- 430
||||||||||||||||| |||||||||||||||||||| | |||| | | | |||
Sbjct 1273 TACTACGAGGAACAACAAAAGAGTCTTCAATCTGGAGGCA-CAGTA-ACCTCAGAATGCC 1330
Query 431 TTATCACACCACTTAAACTTATATTGATGAGTGCGACTTTGCGGGTGGAAGATTTTGTAT 490
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1331 AAATCACGCCACTTAAACTTATATTGATGAGTGCGACTTTGCGAGTGGAAGATTTTGTAT 1390
Query 491 CGGGGAAAAGGTTATTCCCTAATATACCTCCTCTTATAGAGGTTCCCACTCGACAGTATC 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 CGGGGAAAAGGTTATTCCCTAATATACCTCCTCTTATAGAGGTTCCCACTCGACAGTATC 1450
Query 551 CAGTTACTATACATTTCTCCAAGAGGACTGAGGTTGTTGATTATATTGGT 600
|||| ||||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct 1451 CAGTAACTATACATTTCTCCAAGAAGACTGAGATTGTTGATTATATAGGT 1500
Score = 361 bits (195), Expect = 3e-98
Identities = 245/269 (91%), Gaps = 3/269 (1%)
Strand=Plus/Plus
Query 2112 CGAGCTCCTACTCACCAACAAACCGTACATGCACAGAGCGACACGGGTGAAGCCGA-AAT 2170
|||||||||||||||||||| ||| ||||||||| ||||||| ||||||| ||| | |||
Sbjct 3267 CGAGCTCCTACTCACCAACAGACCATACATGCACGGAGCGACTCGGGTGAGGCC-AGAAT 3325
Query 2171 GGCTGGTGAAGCACTCAAAGTCTCTCTGCGTGTTCTCCACACCACTCAAGGACCCGAAAC 2230
|||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 3326 GGCTGGTGAAGCACGCAAAGTCTCTCTGCGTGTTCTCTGCACCGCTCAAGGACCCGAAAC 3385
Query 2231 CATATTACTCGAGTGAGGGGGATAGAGTTATGTGCTGGGCCGTTCCGAGTTTTGGTCCTC 2290
|||||||||| ||||||| |||||||||| ||||||||| |||||||||||| |||||||
Sbjct 3386 CATATTACTCAAGTGAGGAGGATAGAGTTTTGTGCTGGGTCGTTCCGAGTTTCGGTCCTC 3445
Query 2291 GTAACTGGGGGCTTCCAGCTCACAGTGTGGCAATAACAGAGGATATACACCGAGCAGCGG 2350
||| |||| ||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 3446 ATAATTGGGAACTTCCGGCTCACAGTGTGGCAATAACAGAGGATAGAGACCGAGCAGCGG 3505
Query 2351 -TTTCGGATGCGCTTTGCTTCAAGGAGAG 2378
||||||||||||||||||||||||||||
Sbjct 3506 CTTTCGGATGCGCTTTGCTTCAAGGAGAG 3534
Score = 243 bits (131), Expect = 1e-62
Identities = 163/179 (91%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 69 TCAGTTTCTTTATGAAGCTGGTTTAGGTTTAAAGCAATTCACTTCTCGAAGTGGGATTAC 128
|||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct 921 TCAGTTCCTTTATGAAGCTGGTTTTGGTTCAAAGCAATTCAGTTCTCGAAGTGGGATTAT 980
Query 129 CAGGATTACTCAACCACGCCGTGTTGCTGTCCTTGCCACTGCCAAGAGAGTGGCATTTGA 188
| ||||||| |||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 981 CGGGATTACCCAACCACGCCGTGTCGCCGTTCTTGCCACTGCCAAGAGAGTGGCATTTGA 1040
Query 189 GCTTGGACTTCGTCTCGGTAAAGAAGTCGGGTTTCAAGTTAGATACGACAAAAAGATTG 247
|||||| ||||||| |||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1041 GCTTGGTGTTCGTCTTGGTAAAGAGGTTGGGTTTCAAGTTAGGTACGACAAAAAGATTG 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150751663715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5