BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936365
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26590.1 | Symbols: | MATE efflux family protein | chr3:976... 2486 0.0
AT5G38030.1 | Symbols: | MATE efflux family protein | chr5:151... 1860 0.0
AT1G12950.1 | Symbols: RSH2 | root hair specific 2 | chr1:44197... 953 0.0
> AT3G26590.1 | Symbols: | MATE efflux family protein | chr3:9761700-9765315
REVERSE LENGTH=1786
Length=1786
Score = 2486 bits (1346), Expect = 0.0
Identities = 1477/1541 (96%), Gaps = 6/1541 (0%)
Strand=Plus/Plus
Query 8 CTCTCTCTCTCAAGATGATAAAAGACAAAGATATAACGGAGACGCTTCTCACTGCGGCGG 67
|||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 43 CTCTTTCTCTTAAGATGGCAAAAGACAAAGATATAACGGAGACGCTTCTCACTGCGGCGG 102
Query 68 AAGAACATCCTGATCTTCCTTTCTTATCCGTCGACGATATTCCTCCGATCACCACCGTCG 127
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 AAGAACGTTCTGATCTTCCTTTCTTATCCGTCGACGATATTCCTCCGATCACCACCGTCG 162
Query 128 GTGGCTTCGTTAGGGAGTTCAACGTGGAAACCAAAAAGCTATGGTACTTGGCCGGCCCCG 187
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 163 GTGGCTTCGTTAGGGAATTCAACGTGGAAACCAAAAAGCTATGGTACTTGGCCGGTCCCG 222
Query 188 CCATTTTCACGTCCGTGAACCAATATTCTCTCGGCGCTATTACTCAGGTCTTCGCTGGTC 247
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 223 CCATTTTCACATCCGTGAACCAATATTCTCTCGGCGCTATTACTCAGGTCTTCGCCGGTC 282
Query 248 ACATCAGCACCATCGCTCTTGCCGCTGTCTCCGTCGAAAACTCCGTCGTTGCCGGCTTCT 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 ACATCAGCACCATCGCTCTTGCCGCTGTCTCCGTCGAAAACTCCGTCGTTGCCGGCTTCT 342
Query 308 CATTCGGCATCATGCTTGGAATGGGAAGTGCGTTAGAAACGCTATGTGGACAAGCGTTTG 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CATTCGGCATCATGCTTGGAATGGGAAGTGCGTTAGAAACGCTATGTGGACAAGCGTTTG 402
Query 368 GAGCAGGGAAATTGTCAATGCTCGGCGTTTACTTGCAACGTTCATGGGTGATACTAAACG 427
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 403 GAGCAGGAAAATTGTCAATGCTTGGCGTTTACTTGCAACGATCATGGGTGATACTAAACG 462
Query 428 TGACCGCTCTTATCCTCTCTCTCCTTTACATTTTCGCCGCCCCAATCCTCGCGTCCATCG 487
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 463 TGACTGCTCTTATCCTCTCTCTCCTTTACATTTTCGCCGCCCCTATCCTCGCGTCCATTG 522
Query 488 GCCAAACGGCGGCGATCTCTAGCGCCGCCGGAATATTTTCCATCTACATGATCCCTCAGA 547
| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 523 GTCAAACGGCGGCAATCTCTAGCGCGGCCGGAATATTTTCCATCTACATGATCCCTCAAA 582
Query 548 T-TTTCGCATACGCGATTAATTTCCCAACCGCTAAATTCTTGCAATCACAAAGCAAGATA 606
| ||| || ||||| || ||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 583 TCTTT-GCCTACGCCATCAATTTTCCAACCGCTAAATTTTTGCAATCGCAAAGCAAGATA 641
Query 607 ATGGTCATGGCCGCGATCTCGGCTGTTGCACTTGTTATACACGTGCCTCTCACGTGGTTT 666
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 ATGGTCATGGCCGTGATATCGGCTGTTGCACTTGTTATACACGTGCCTCTCACGTGGTTT 701
Query 667 GTCATTGTGAAGCTCCATTGGGGTATGCCGGGTCTAGCCGTCGTGCTTAACGCGTCGTGG 726
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 702 GTCATTGTGAAGCTCCAGTGGGGTATGCCAGGTCTAGCCGTAGTGCTTAACGCGTCGTGG 761
Query 727 GTG-TTCATTGACATGGCTCAGCTCGTGTACATATTTAGTGGTACGTGTGGTGAAGCTTG 785
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 762 -TGCTTCATTGACATGGCTCAGCTTGTGTACATATTTAGTGGTACGTGTGGTGAGGCTTG 820
Query 786 GTCTGGTTTATCGTGGGAGGCTTTTCATAATTTGTGGGGTTTCGTTAGATTGTCTTTGGC 845
||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 821 GTCTGGTTTCTCGTGGGAGGCTTTTCATAATTTGTGGAGTTTCGTTAGATTATCTTTGGC 880
Query 846 TTCTGCTGTTATGCTCTGTTTGGAGGTGTGGTATTTTATGGCAATCATATTATTTGCTGG 905
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 881 TTCTGCTGTTATGCTCTGTTTGGAGGTTTGGTATTTTATGGCAATCATATTATTTGCTGG 940
Query 906 ATATTTGAAGAATGCTGAAATCTCCGTTGCTGCCCTCTCCATCTGCATGAATATTTTGGG 965
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 941 ATATTTGAAGAATGCTGAAATCTCTGTAGCTGCCCTCTCCATCTGCATGAATATTTTGGG 1000
Query 966 ATGGACTGCTATGATTGCTATTGGGATGAACACAGCCGTAAGTGTGAGAGTGTCTAATGA 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 ATGGACTGCTATGATTGCTATTGGGATGAACACAGCCGTAAGTGTGAGAGTGTCTAATGA 1060
Query 1026 ACTAGGAGCTAACCATCCAAGAACCGCGAAATTCTCACTACTAGTGGCAGTGATTACATC 1085
| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1061 ATTAGGAGCTAACCATCCAAGAACCGCGAAATTCTCACTACTTGTGGCAGTGATAACATC 1120
Query 1086 GACGTTGATCGGATTCATTGTATCAATGGTTCTACTCATCTTTAGAGATCAATATCCATC 1145
|||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1121 GACGCTAATCGGATTCATTGTATCAATGATTCTACTCATCTTTAGAGATCAATATCCATC 1180
Query 1146 GCTTTTTGTGAAAGACGAAGAAGTCATCAATCTTGTTAAAGAACTCACACCAATACTTGC 1205
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1181 ACTTTTTGTGAAAGACGAAAAAGTCATCATTCTTGTTAAAGAACTCACACCAATACTTGC 1240
Query 1206 ACTCTCCATTGTCATCAACAATGTCCAACCTGTCTTATCAGGTGTGGCTGTCGGAGCTGG 1265
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1241 ACTTTCCATTGTCATCAACAATGTCCAACCTGTCTTATCAGGTGTGGCTGTGGGAGCTGG 1300
Query 1266 ATGGCAAGCAGTGGTGGCGTACGTTAACATCGCCTGTTATTACGTGTTTGGAATACCATT 1325
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1301 ATGGCAAGCAGTGGTGGCCTACGTTAACATCGCCTGCTATTACGTGTTTGGAATCCCATT 1360
Query 1326 TGGTCTATTATTGGGATACAAGCTTAACTTTGGTGTAATGGGAATCTGGTGCGGAATGTT 1385
||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1361 TGGTCTATTATTGGGGTACAAGCTTAACTATGGTGTAATGGGAATCTGGTGTGGAATGTT 1420
Query 1386 GACGGGAACCGTGGTTCAGACAATAGTTTTAACATGGATGATCTGCAAAACAAATTGGGA 1445
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 GACGGGGACCGTGGTTCAGACAATAGTTTTAACATGGATGATCTGCAAAACAAATTGGGA 1480
Query 1446 CACAGAGGCTTCAATGGCTGAGGATAGGATAAGAGAATGGGGAGGAGAAGTATCGGAAAT 1505
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1481 CACAGAGGCTTCAATGGCTGAGGATAGGATAAGAGAATGGGGAGGAGAAGTATCAGAAAT 1540
Query 1506 AAAGCAACTCATAAACTAAAAGACAT--TAGTATTCAAAGA 1544
|||||||||||||||||||||||||| |||||||||||||
Sbjct 1541 AAAGCAACTCATAAACTAAAAGACATCATAGTATTCAAAGA 1581
> AT5G38030.1 | Symbols: | MATE efflux family protein | chr5:15171246-15175457
REVERSE LENGTH=1892
Length=1892
Score = 1860 bits (1007), Expect = 0.0
Identities = 1353/1518 (89%), Gaps = 31/1518 (2%)
Strand=Plus/Plus
Query 29 AAGACAAAGA-TATAACGGAGACGCTTCTCA-CTGCGGCGGAAGAA-CATCCTGATCTTC 85
|||||||| | | | |||||||| ||||| | |||||||||||||| || |||| |||||
Sbjct 163 AAGACAAA-ATTCTTACGGAGACCCTTCT-ATCTGCGGCGGAAGAACCA-CCTGCTCTTC 219
Query 86 CTTTCTTATCCGTCGACGATATTCCTCCGATCACCACCGTCGGTGGCTTCGTTAGGGAGT 145
|||||| |||||| || ||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 220 CTTTCTCATCCGTGGAAGATATTCCTCCGATCACCACCGTTGGTGGCTTCGTCAAGGAGT 279
Query 146 TCAACGTGGAAACCAAAAAGCTATGGTACTTGGCCGGCCCCGCCATTTTCACGTCCGTGA 205
|||||||||| ||||||||||||||||||||| || || |||||||||| ||| | |
Sbjct 280 TCAACGTGGAGGTCAAAAAGCTATGGTACTTGGCAGGGCCAGCCATTTTCATGTCTAT-A 338
Query 206 A-CCAATATTCTCTCGGCGCTATTACTCAGGTCTTCGCTGGTCACATCAGCACCATCGCT 264
| ||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct 339 ACCCAATATTCTCTCGGCGCTGCTACTCAGGTCTTCGCCGGACACATCAGCACCATCGCT 398
Query 265 CTTGCCGCTGTCTCCGTCGAAAACTCCGTCGTTGCCGGCTTCTCATTCGGCATCATGCTT 324
|| || || |||||||| |||||||| ||| | || || |||||||| || ||||||||
Sbjct 399 CTCGCAGCGGTCTCCGTTGAAAACTCGGTCATCGCTGGATTCTCATTTGGTGTCATGCTT 458
Query 325 GGAATGGGAAGTGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCA 384
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GGAATGGGAAGCGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCA 518
Query 385 ATGCTCGGCGTTTACTTGCAACGTTCATGGGTGATACTAAACGTGACCGCTCTTATCCTC 444
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||
Sbjct 519 ATGCTTGGCGTTTACTTGCAACGATCATGGGTGATACTAAACGTGACCGCGGTTATTCTC 578
Query 445 TCTCTCCTTTACATTTTCGCCGCCCCAATCCTCGCGTCCATCGGCCAAACGGCGGCGATC 504
|| || |||||||| |||||||| ||||||||||||| |||||| |||||| ||||||||
Sbjct 579 TCGCTTCTTTACATCTTCGCCGCTCCAATCCTCGCGTTCATCGGTCAAACGCCGGCGATC 638
Query 505 TCTAGCGCCGCCGGAATATTTTCCATCTACATGATCCCTCAGAT-TTTCGCATACGC-GA 562
||||||||| | |||||||||||||||||||||||||||||||| ||| || ||||| |
Sbjct 639 TCTAGCGCCACGGGAATATTTTCCATCTACATGATCCCTCAGATCTTT-GCTTACGCTG- 696
Query 563 TTAATTTCCCAACCGCTAAATTCTTGCAATCACAAAGCAAGATAATGGTCATGGCCGCGA 622
|||||| |||||| ||||| |||||||||||||||||||| || ||||| ||||| ||||
Sbjct 697 TTAATTACCCAACGGCTAAGTTCTTGCAATCACAAAGCAAAATCATGGTGATGGCTGCGA 756
Query 623 TCTCGGCTGTTGCACTTGTTATACACGTGCCTC-TCACGTGGTTTGTCATTGTGAAGCTC 681
| || || |||||||||||| ||||||||| || |||||||||||||||||| | ||||
Sbjct 757 TATCAGCGGTTGCACTTGTTCTACACGTGC-TCCTCACGTGGTTTGTCATTGAGGGGCTC 815
Query 682 CATTGGGGTATGCCGGGTCTAGCCGTCGTGCTTAACGCGTCGTGGGTG-TTCATTGACAT 740
|| ||||| | | ||||||||||||||||||| ||||| |||||| || ||||||| | |
Sbjct 816 CAGTGGGGCACGGCGGGTCTAGCCGTCGTGCTCAACGCCTCGTGG-TGGTTCATTGTCGT 874
Query 741 GGCTCAGCTCGTGTACATATTTAGTGGTACGTGTGGTGAAGCTTGGTCTGGTTTATCGTG 800
||| ||||| |||||||||||||||||||| || ||||||||||||||||| || || ||
Sbjct 875 GGCGCAGCTTGTGTACATATTTAGTGGTACATGCGGTGAAGCTTGGTCTGGATTCTCATG 934
Query 801 GGAGGCTTTTCATAATTTGTGGGGTTTCGTTAGATTGTCTTTGGCTTCTGCTGTTATGCT 860
||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct 935 GGAAGCTTTTCATAATTTGTGGAGTTTCGTCAGATTATCTTTGGCTTCTGCTGTTATGCT 994
Query 861 CTGTTTGGAGGTGTGGTATTTTATGGCAATCATATTATTTGCTGGATATTTGAAGAATGC 920
|||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 995 CTGTTTGGAGGTATGGTATCTTATGGCAGTCATATTATTTGCTGGATATTTGAAGAATGC 1054
Query 921 TGAAATCTCCGTTGCTGCCCTCTCCATCTGCATGAATATTTTGGGATGGACTGCTATGAT 980
||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1055 TGAGATCTCCGTAGCTGCTCTCTCCATCTGCATGAACATTTTGGGATGGACTGCAATGAT 1114
Query 981 TGCTATTGGGATGAACACAGCCGTAAGTGTGAGAGTGTCTAATGAACTAGGAGCTAACCA 1040
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 1115 TGCTATTGGGATGAACGCAGCCGTAAGTGTGAGAGTGTCTAATGAATTAGGAGCAAAACA 1174
Query 1041 TCCAAGAACCGCGAAATTCTCACTACTAGTGGCAGTGATTACATCGAC-GTTGATCGGA- 1098
|||||||||||| |||||||||||||||||||||||||| ||||| || || |||||||
Sbjct 1175 TCCAAGAACCGCAAAATTCTCACTACTAGTGGCAGTGATAACATCTACAGT-GATCGGAC 1233
Query 1099 TT-CATTGTATCAATGGTTCTACTCATCTTTAGAGATCAATATCCATCGCTT-TTTGTGA 1156
|| | | ||||||| | ||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1234 TTGC-TA-TATCAATTGCTCTACTCATCTTTAGAGATAAATATCCATCG-TTATTTGTGG 1290
Query 1157 AAGACGAAGAAGTCATCAATCTTGTTAAAGAACTCACACCAATACTTGCACTCTCCATTG 1216
|||||||||||| |||| | |||||||||| || ||||||||||| ||| |||| ||||
Sbjct 1291 GAGACGAAGAAGTTATCATTGTTGTTAAAGATCTTACACCAATACTCGCAGTCTCTATTG 1350
Query 1217 TCATCAACAATGTCCAACCTGTCTTATCAGGTGTGGCTGTCGGAGCTGGATGGCAAGCAG 1276
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1351 TCATCAACAATGTCCAACCTGTCTTATCAGGGGTGGCTGTGGGAGCTGGATGGCAAGCAG 1410
Query 1277 TGGTGGCGTACGTTAACATCGCCTGTTATTACGTGTTTGGAATACCATTTGGTCTATTAT 1336
| ||||| ||||||||||| | |||||||||||||||||||| ||||||||||| |||
Sbjct 1411 TTGTGGCATACGTTAACATAGTATGTTATTACGTGTTTGGAATCCCATTTGGTCTGTTAC 1470
Query 1337 TGGGATACAAGCTTAACTTTGGTGTAATGGGAATCTGGTGCGGAATGTTGACGGGAACCG 1396
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1471 TAGGCTACAAGCTTAACTTTGGTGTAATGGGAATCTGGTGCGGAATGTTGACAGGAACCG 1530
Query 1397 TGGTTCAGACAATAGTTTTAACATGGATGATCTGCAAAACAAATTGGGACACAGAGGCTT 1456
|||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1531 TGGTTCAGACAATAGTCTTAACATGGATGATCTGTAGAACAAATTGGGACACAGAGGCTG 1590
Query 1457 CAATGGCTGAGGATAGGATAAGAGAATGGGGAGGAGAAGTATCGGAAATAAAGCAACTCA 1516
|||||||||||| |||||||||||| ||||||||||||||||| || | ||||||
Sbjct 1591 CAATGGCTGAGGGTAGGATAAGAGAGTGGGGAGGAGAAGTATCAGA--T----CAACTCT 1644
Query 1517 TAAACTAAAA-GACATTA 1533
|||||||||| |||||||
Sbjct 1645 TAAACTAAAAAGACATTA 1662
> AT1G12950.1 | Symbols: RSH2 | root hair specific 2 | chr1:4419770-4422638
FORWARD LENGTH=1824
Length=1824
Score = 953 bits (516), Expect = 0.0
Identities = 1136/1430 (79%), Gaps = 64/1430 (4%)
Strand=Plus/Plus
Query 95 CCGTCGACGATATTCCTCCGATCACCACCGTCGGTGGCTTCGTTAGGGAGTTCA-ACGTG 153
||| || |||||| ||||| ||| || ||||| | ||| || || ||||| | | |
Sbjct 219 CCGCCGTCGATATCCCTCCAATCTCCGGTGTCGGAGACTTTGTCAGAGAGTTTAGA-ATC 277
Query 154 GAAACCAAAAAGCTATGG-TACTTGGCCGGCCCCGCCATTTTCACGTCCG-TGAACCAAT 211
|| | | |||||||||| || | || ||||| |||||||| || || ||| |||||
Sbjct 278 GAGTCTAGAAAGCTATGGAAAC-TAGCTGGCCCTGCCATTTTTAC-AACGATGAGCCAAT 335
Query 212 ATTCTCTCGGCGCTATTACTCAGGTCTTCGCTGGTCACATCAGCAC-CATCGCTCTTGCC 270
| |||||||| || | ||||| || ||||| || || || ||||| | | |||||||||
Sbjct 336 ACTCTCTCGGAGCCGTCACTCAAGTTTTCGCCGGACATATTAGCACTC-TTGCTCTTGCC 394
Query 271 GCTGTCTCCGTCGAAAACTCCGTCGTTGCCGGCTTCTCATTCGGCATCATGCTTGGAATG 330
|| |||||| | || ||||||||| | |||||||| ||||| || |||||||||||||||
Sbjct 395 GCCGTCTCCATTGAGAACTCCGTCATCGCCGGCTTTTCATTTGGTATCATGCTTGGAATG 454
Query 331 GGAAGTGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCAATGCTC 390
||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 455 GGAAGTGCGTTGGAAACGCTATGCGGACAAGCGTTTGGAGCAGGGAAAGTATCAATGCTT 514
Query 391 GGCGTTTACTTGCAACGTTCATGGGTGATACTAAACGTGACCGCTCT-TATCCTCTCTCT 449
||||||||||| ||||| || ||||| || |||| ||| |||||||| | |||| |||||
Sbjct 515 GGCGTTTACTTACAACGCTCGTGGGTTATTCTAAGCGTAACCGCTCTCT-TCCTTTCTCT 573
Query 450 CCTTTACATTTTCGCCGCCCCAATCCTCG-CGTCCATCGGCCAAACGGCGGCGATCTCTA 508
| || || ||||| || |||||||| | | | || |||||||| || || |||||
Sbjct 574 AATCTATATCTTCGCGGCTCCAATCCT-GACCTTTATAGGCCAAACCGCTGCAATCTC-- 630
Query 509 GCGCC---GCCGGAATATTT-TCCATCTACATGATCCCTCAGAT-TTTCGCATACGCGAT 563
| ||| || || || ||| ||||| ||||||||||| || || ||| || ||||| ||
Sbjct 631 G-GCCATGGCAGGGAT-TTTCTCCATTTACATGATCCCACAAATCTTT-GCCTACGCTAT 687
Query 564 TAATTTCCCAACCGCTAAATTCTTGCAATCACAAAGCAAGATAATGGTCATGGCCGCG-A 622
|| |||||||| || || || |||||||||||||||||||| ||||||||||| | | |
Sbjct 688 CAACTTCCCAACGGCGAAGTTTTTGCAATCACAAAGCAAGATCATGGTCATGGCTG-GAA 746
Query 623 TCT-CGGCTGTTGCACTTGTTATACA-CGTGCCTCTCACGTGGTTTGTCATTGT-GAAGC 679
| | ||| ||| | ||||| || || || || |||||||| | |||| ||| | |
Sbjct 747 TATCCGG-TGTGGTTCTTGTGATCCATAGTTTCT-TCACGTGGCTAGTCA-TGTCTAGGT 803
Query 680 TCCATTGGGGTA-TGCCGGGTCTAGCCGTCGTGCTTAACGCGTCGTGGGT-GTTCATTGA 737
| || ||||| | | || ||| |||| | ||||||||| |||||| ||| | |||| |
Sbjct 804 TACACTGGGG-ACTTCCTGGTTTAGCTTTAGTGCTTAACACGTCGT-GGTGGGTCATCGT 861
Query 738 CATGGCTCAGCTCGTGTACATATTTAGTGGTACGTGTGGTGAAGCTTGGTCTGG-TTTAT 796
| || || || ||||| || |||| | |||||||||| || ||||||||||| ||||
Sbjct 862 TGTTGCACAACTTGTGTATATCTTTAATTGTACGTGTGGAGAGGCTTGGTCTGGATTTA- 920
Query 797 CGTGGGAGGCTTTTCATAATTTGT-GGGGTTTCGTTAGATTGTCTTTGGCTTCTGCTGTT 855
|||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 921 CGTGGGAGGCTTTTCACAATTTGTGGGGGTTT-GTTAAATTGTCTTTGGCTTCTGCTGCC 979
Query 856 ATGCTCTGTTTGGAGGTGTGGTATTTTATGGCAATCATATTATTTGCTGGATATTTGAAG 915
||||||||||||||| | ||||||||||||||| || |||||||||||||||||||||||
Sbjct 980 ATGCTCTGTTTGGAGATTTGGTATTTTATGGCACTCGTATTATTTGCTGGATATTTGAAG 1039
Query 916 AATGCTGAAATCTCCGTTGCTGCCCTCTCCATCTGCATGAATATTTTGGGATGGACTGCT 975
||||||||| ||||||| ||||| |||||||| |||||||| |||||||||||| | |||
Sbjct 1040 AATGCTGAAGTCTCCGTAGCTGCACTCTCCATATGCATGAACATTTTGGGATGGGCAGCT 1099
Query 976 ATGATTGC-TATTGGGATGAACACAGCCGTAAGTGTGAGAGTGTCTAATGAACTAGGAGC 1034
||| |||| | |||||| ||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct 1100 ATGGTTGCGT-TTGGGACAAACGCAGCAGTAAGTGTGAGAGTGTCAAATGAGCTAGGAGC 1158
Query 1035 TAACCATCCAAGAACCGCGAAATTCTCACTACTAGTGGCAGTGAT-TACATCGAC-GTTG 1092
|| ||| |||||||| || || || || ||| | ||||| ||||| | ||||| |
Sbjct 1159 TAGCCACCCAAGAACGGCCAAGTTTTCTCTAGTTGTGGCTGTGATATTG-TCGACAGCA- 1216
Query 1093 ATCGG-AT-TCATTGTATCAAT-GGTTCTACTCATCTTTAG-AGATCAATATCCATCGCT 1148
|| || || | || || || || |||||| |||| | | || | || || || |
Sbjct 1217 ATTGGGATGT--TTATAGCAGCCGGC-CTACTCTTCTTCCGCA-ATGAGTA-CC--CGGT 1269
Query 1149 TTT-T--GTGAAAGACGAAGAAGTCATCAATCTTGTTAAAGAACTCACACCAATACTTGC 1205
||| | ||| |||| |||||||| | ||| | |||| ||||||||| ||||| |||||
Sbjct 1270 TTTGTTTGTGGAAGATGAAGAAGTTAGAAATGTGGTTAGAGAACTCACGCCAATGCTTGC 1329
Query 1206 ACTCTC-CATTGTCATCAACAATGTCCAACCTGTCTTATCAGGTGTGGCTGTCGGAGCTG 1264
|| | |||||||||||||||||| |||||||| || || || |||||||| ||||| |
Sbjct 1330 -CTTTTGCATTGTCATCAACAATGTTCAACCTGTATTGTCTGGAGTGGCTGTGGGAGCGG 1388
Query 1265 GATGGCAAGCAGTGGTGGCGTACGTTAACATCGCCTGTTATTACGTGTTTGGAATACCAT 1324
||||||||||||| || ||||| || ||||| || || || ||| |||| ||| | ||||
Sbjct 1389 GATGGCAAGCAGTTGTAGCGTATGTGAACATAGCATGCTACTACTTGTTCGGAGTCCCAT 1448
Query 1325 TTGGTCTATTATTGGGATACAAGCTT-AACTTTGGTGTAATGGGAATCTGGTGCGGAATG 1383
|||||||||||||||||| |||||| || | ||| ||||||||||| ||||| || |||
Sbjct 1449 TTGGTCTATTATTGGGATTTAAGCTTGAA-TATGGAGTAATGGGAATTTGGTGGGGGATG 1507
Query 1384 TTGACGGGAACCGTGGTTCAGA-CAATAGTTTTAACATGGATGATCTGCAAAACAAATTG 1442
|||||||||| | ||||| | | ||||| | || ||||||||||||||||| |||||
Sbjct 1508 GTGACGGGAACTTTTGTTCA-ATCGATAGTCCTGACTTGGATGATCTGCAAAACCAATTG 1566
Query 1443 GGACACAGAGGCTTCAATGGCTGAGGATAGGATAAGAGAATGGGGAGGAG 1492
||| | ||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 1567 GGAGAAAGAGGCTTCAATGGCAGAGGAAAGGATAAAAGAATGGGGAGGAG 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76204427310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5