BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936371
Length=409
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26660.1 | Symbols: LBD24 | LOB domain-containing protein 24... 586 5e-167
AT3G26620.1 | Symbols: LBD23 | LOB domain-containing protein 23... 580 2e-165
> AT3G26660.1 | Symbols: LBD24 | LOB domain-containing protein
24 | chr3:9797129-9797620 REVERSE LENGTH=383
Length=383
Score = 586 bits (317), Expect = 5e-167
Identities = 363/385 (94%), Gaps = 3/385 (1%)
Strand=Plus/Plus
Query 13 AAAATCTTGAGATGAATCCAAAAAGATGTGCAGCTTGCAAATATCTGAGAAGAAGATGTC 72
|||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAAATC-TAAGATGAATCCAAAAAGATGTGCAGCTTGCAAGTATCTGAGAAGAAGATGTC 59
Query 73 CAAAAGATTGCATTTTCTCACCATATTTCCCCCCAAACGATCCTGC-AAAATTTGCATGC 131
||||||||||| | ||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 60 CAAAAGATTGCGTATTCTCACCATATTTCCCTCCAAACGATCCT-CAAAAATTTGCATGT 118
Query 132 ATCCACAGAATCTATGGTGCTGGTAATGTTTCCAAAATGCTTCAGCAACTTCCTGATCAG 191
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 119 GTCCACAGAATCTATGGTGCTGGAAACGTTTCCAAAATGCTTCAGCAACTTCCTGATCAG 178
Query 192 ACAAGAGCAGAAGCAGTGGAATCTTTGTGCTTTGAAGCAAAATGCAGAGTAGATGATCCT 251
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 179 ACAAGAGCTGAAGCAGTGGAATCTTTGTGCTTTGAAGCAAAATGCAGAGTAGATGACCCT 238
Query 252 GTTTATGGTTGTGTTGGCATTATTCATTTACTTCAAACTCAAATTCAGCAAACTCAGAAT 311
||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct 239 GTTTATGGTTGTGTTGGCATTATTCATTTACTTAAAACTCAGATTCAGAAAACTCAGAAT 298
Query 312 CAGTTGGCCAAAACTCAAGCTGAGATTGCTGTTGCTCAAACCAAATTTAGCCAAACCCAT 371
| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 299 GAATTAGCCAAAACTCAAGCTGAGATTGCTGTTGCTCAAACCAAACTTAGCCAAACCCAA 358
Query 372 AATTCTGATTTTATGTAATATCTCT 396
|||||||||||||||||||||||||
Sbjct 359 AATTCTGATTTTATGTAATATCTCT 383
> AT3G26620.1 | Symbols: LBD23 | LOB domain-containing protein
23 | chr3:9790628-9791117 FORWARD LENGTH=371
Length=371
Score = 580 bits (314), Expect = 2e-165
Identities = 353/372 (95%), Gaps = 2/372 (1%)
Strand=Plus/Plus
Query 24 ATGAATCCAAAAAGATGTGCAGCTTGCAAATATCTGAGAAGAAGATGTCCAAAAGATTGC 83
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAATCCAAAAAGATGTGCAGCTTGCAAGTATCTGAGAAGAAGATGTCCAAAAGATTGC 60
Query 84 ATTTTCTCACCATATTTCCCCCCAAACGATCCTGC-AAAATTTGCATGCATCCACAGAAT 142
| ||||||||||||||||| |||||||||||| | |||||||||||| ||||||||||
Sbjct 61 GTATTCTCACCATATTTCCCTCCAAACGATCCT-CAAAAATTTGCATGTGTCCACAGAAT 119
Query 143 CTATGGTGCTGGTAATGTTTCCAAAATGCTTCAGCAACTTCCTGATCAGACAAGAGCAGA 202
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 CTATGGTGCTGGAAACGTTTCCAAAATGCTTCAGCAACTTCCTGATCAGACAAGAGCTGA 179
Query 203 AGCAGTGGAATCTTTGTGCTTTGAAGCAAAATGCAGAGTAGATGATCCTGTTTATGGTTG 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGCAGTGGAATCTTTGTGCTTTGAAGCAAAATGCAGAGTAGATGATCCTGTTTATGGTTG 239
Query 263 TGTTGGCATTATTCATTTACTTCAAACTCAAATTCAGCAAACTCAGAATCAGTTGGCCAA 322
|||||||||||||||||||||| ||||||| |||||| ||||||||||| | || |||||
Sbjct 240 TGTTGGCATTATTCATTTACTTAAAACTCAGATTCAGAAAACTCAGAATGAATTAGCCAA 299
Query 323 AACTCAAGCTGAGATTGCTGTTGCTCAAACCAAATTTAGCCAAACCCATAATTCTGATTT 382
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 300 AACTCAAGCTGAGATTGCTGTTGCTCAAACCAAACTTAGCCAAACCCATATTTCTGATTT 359
Query 383 TATGTAATATCT 394
||||||||||||
Sbjct 360 TATGTAATATCT 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19353083365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5