BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936378
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26690.1 | Symbols: ATNUDT13, ATNUDX13, NUDX13 | nudix hydro... 1059 0.0
AT1G12880.1 | Symbols: atnudt12, NUDT12 | nudix hydrolase homol... 492 2e-138
> AT3G26690.1 | Symbols: ATNUDT13, ATNUDX13, NUDX13 | nudix hydrolase
homolog 13 | chr3:9804253-9805715 REVERSE LENGTH=1027
Length=1027
Score = 1059 bits (573), Expect = 0.0
Identities = 613/633 (97%), Gaps = 0/633 (0%)
Strand=Plus/Plus
Query 20 AAAAATGTCGAATCTTTCAGCAAGAACAGGACGAGACCATCAACGTTATGACAACAACTT 79
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 250 AAAAATGTCGAATCTTTCTGCAAGAACAGGACGAGACCATCAACGTTATGACAACAACTT 309
Query 80 CCGTCTTGTTTCTGGATGCATTCCCTATAGGCTGGTGAAAGATGAAGAAGAGGACTCAAC 139
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 310 CCGTCTTGTTTCTGGATGCATTCCGTATAGGCTGGTGAAAGATGAAGAAGAGGACTCAAC 369
Query 140 AAGTGTTGACTTTGAAAACAAGCTTCAAGTTCTTATGATTTCATCTCCCAATCGACACGA 199
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 370 AAGTGTTGACTTTGAAAACAAGCTTCAAGTTCTTATGATTTCATCTCCTAATCGTCACGA 429
Query 200 TCTTGTCTTCCCTAAGGGAGGATGGGAAGATGATGAAACTGTTCTTGAAGCTGCTTCTCG 259
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TCTTGTCTTCCCAAAGGGAGGATGGGAAGATGATGAAACTGTTCTTGAAGCTGCTTCTCG 489
Query 260 TGAAGCTATGGAAGAAGCAGGAGTTAAAGGAATACTAAGAGAAGATCCATTAGGGGTTTG 319
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 490 TGAAGCTATGGAAGAAGCAGGAGTTAAAGGAATACTAAGAGAAGATCCATTAGGAGTTTG 549
Query 320 GGAATTTAGAAGCAAGAGTAGCAGTTTGGAAGCTGATTGCTGCTTAGGTGGTGGATGCAA 379
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 550 GGAATTTAGAAGTAAGAGTAGCAGTGTGGAAGCTGATTGCTGCTTAGGTGGTGGATGCAA 609
Query 380 AGGTTATATGTTTGCGTTAGAGGTTAAGGAAGAACTTGCTACATGGCCAGAGCAAGATAA 439
|||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||| |
Sbjct 610 AGGTTATATGTTTGCGTTAGAGGTGAAGGAAGAACTTGCGATATGGCCTGAGCAAGATGA 669
Query 440 CCGCGAGAGAAGATGGCTGAATGTTAAAGAAGCTTTGGAACTGTGTCGGTATGAGTGGAT 499
|||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 670 CCGCGAGAGAAGATGGCTGAATGTAAAAGAAGCCTTGGAGCTGTGTCGGTATGAGTGGAT 729
Query 500 GCAGAGCGCTCTTGAAGAGTTTCTAAGAGTAATGGCAGAAGAAGGAACCACAAAGGAAGA 559
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 730 GCAGAGCGCTCTTGAAGAGTTTCTACGAGTAATGGCAGAAGAAGGAAGCACAAAGGAAGA 789
Query 560 CTCTCTTGCCATTTCCAGCATTTCAAATCGAGGAGAGCGTCAAATTGATCCTCGGTACTG 619
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 790 CTCTCTTGCCATTTCCAGCATTTCAAATCGAGGAGAGCGTCAAATTGATCCTCGCTACTG 849
Query 620 CTTTGTAGTCTAACTAGTTTGGTTTCTCTAGGC 652
|||||||||||||||||||| ||||||||||||
Sbjct 850 CTTTGTAGTCTAACTAGTTTCGTTTCTCTAGGC 882
> AT1G12880.1 | Symbols: atnudt12, NUDT12 | nudix hydrolase homolog
12 | chr1:4389751-4391151 FORWARD LENGTH=1002
Length=1002
Score = 492 bits (266), Expect = 2e-138
Identities = 521/638 (82%), Gaps = 41/638 (6%)
Strand=Plus/Plus
Query 22 AAATGTCGAATCTTTCAGCAAGAACAGGACGAGACCATCAACGTTATGACAACAACTTCC 81
|||||||| |||||| | | ||||||||||| | ||||||||| |||||||||||||
Sbjct 284 AAATGTCGGTTCTTTCTTCTCGGACAGGACGAGATCGTCAACGTTACGACAACAACTTCC 343
Query 82 GTCTTGTTTCTGGATGCATTCCCTATAGGCTGGTGAAA---GATG-AA--GAAGAGGACT 135
|||| ||||||||||||||||| ||||||||| ||||| || | || ||||| ||||
Sbjct 344 GTCTCGTTTCTGGATGCATTCCTTATAGGCTGATGAAAGCTGACGAAACTGAAGAAGACT 403
Query 136 CAACAAGTGTTGACTTTGAAAACAAGCTTCAAGTTCTTATGATTTCATCTCCCAATCGAC 195
|| |||||||||||| |||||| ||| ||||||||||| |||||||||| ||||| |
Sbjct 404 ---CAGGTGTTGACTTTGTAAACAAACTTGAAGTTCTTATGGTTTCATCTCCTAATCGTC 460
Query 196 ACGATCTTGTCTTCCCTAAGGGAGGATGGGAAGATGATGAAACTGTTCTTGAAGCTGCTT 255
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 461 ATGATCTTGTCTTCCCAAAGGGAGGATGGGAAGATGATGAGACTGTTCTTGAAGCTGCTT 520
Query 256 CTCGTGAAGCTATGGAAGAAGCAGGAGTTAAAGGAATACTAAGAGAAGATCCATTAGGGG 315
|||||||||| || |||||||||||||||||||||||||| |||||| ||| ||||| |
Sbjct 521 CTCGTGAAGCCATTGAAGAAGCAGGAGTTAAAGGAATACTTAGAGAACTTCCTTTAGGAG 580
Query 316 TTTGGGAATTTAGAAGCAAGAGTAGCAGTTTGGAAGCTGATTGCTGCTTAGGTGGTGGAT 375
||||||||||||||||||| ||||||| |||| | ||| || | |||||||| ||
Sbjct 581 TTTGGGAATTTAGAAGCAAAAGTAGCACAGTGGAGGATGAATG-T--TTAGGTGG---AT 634
Query 376 GCAAAGGTTATATGTTTGCGTTAGAGGTTAAGGAAGAACTTGCTACAT-GGCCAGAGC-A 433
| ||||| ||||||||||| ||| | |||| |||||||| | || ||||||||| |
Sbjct 635 GTAAAGGATATATGTTTGCATTAAAAGTTACCGAAGAACTCGAGG-ATTGGCCAGAGCGA 693
Query 434 AGATAACCGCGAGA-GAAGATGGCTGAATGTTAAAGAAGCTTTGGAACTGTGTCGGTATG 492
| | || || || | |||||||| ||| |||||||||||| ||||| || ||||||||||
Sbjct 694 A-AGAATCGTGA-ACGAAGATGGTTGACTGTTAAAGAAGCGTTGGAGCTTTGTCGGTATG 751
Query 493 AGTGGATGCAGAGCGCTCTTGAAGAGTTTCTAAGAGTAATGGCAGAAGAA-G--GA---A 546
||||||||||||| || |||||||||||| | |||||||||| ||| ||| | || |
Sbjct 752 AGTGGATGCAGAGAGCACTTGAAGAGTTTTTGAGAGTAATGGAAGATGAAAGAAGATTGA 811
Query 547 CCACAAAGGAAGACTCTCTTGCCAT--TTCCAGCATTTCAAATC--GAGGAG-AGCGTCA 601
||| ||||||| | | || || ||| || |||| | |||||| || ||||
Sbjct 812 GAACAGAGGAAGAGACAGT-GC-ATGATTC-----TT-CAAAGCTAGAGGAGGAGAGTCA 863
Query 602 AATTGATCCTCGGTACTGCTTTGTAGTCTAACTAGTTT 639
||| |||||| ||||||| |||||||| ||||||||||
Sbjct 864 AATAGATCCTTGGTACTGTTTTGTAGT-TAACTAGTTT 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31496810169
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5