BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936390
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26780.1 | Symbols: | Phosphoglycerate mutase family protei... 1775 0.0
> AT3G26780.1 | Symbols: | Phosphoglycerate mutase family protein
| chr3:9848628-9850472 FORWARD LENGTH=1514
Length=1514
Score = 1775 bits (961), Expect = 0.0
Identities = 1155/1245 (93%), Gaps = 27/1245 (2%)
Strand=Plus/Plus
Query 4 CACTATTGACAAAGAAGATGGGTTCTTCACAATC-AGCGgaagtagg-agacgaag--g- 58
|||| || |||||||||||||||||||||||||| | || || | || |||||||| |
Sbjct 103 CACTTTTCACAAAGAAGATGGGTTCTTCACAATCTA-CGCAAAT-GGAAGACGAAGAAGA 160
Query 59 tgaagaagaggaaactgacaatgaagaagaagaagaagaagaTAATGGCAGATCAAACAC 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 AGAAGAAGAGGAAACTGACAATGAAGAAGAAGAAGAAGAAGATAATGGCAGATCAAACAC 220
Query 119 AAGAGAATTAGGCAATCTCCTAGTAAAGAAAGTTCTAGAACAAGAGCCTGAGATGTTACC 178
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 AAGACAATTAGACAATCTCCTAGTAAAGAAAGTTCTAGAACAAGAGCCTGAGATGTTACC 280
Query 179 ATGTCACGCTTCAGCTTCACCACTCTCACCACAACTATCATCTCTCGGAACTCCACGGCT 238
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 281 ATGTCACGCTTCAGCTTCACCACTCTCACCACAACTATCATCTCTCGGTACTCCAAGGCT 340
Query 239 TGGACCATCGATTAAAGTCTGGGATCCTTATAACGTCCTCTCT------CCG---CCGCC 289
|||||||||||||||||||||||||||||| |||||||||||| ||| |||||
Sbjct 341 TGGACCATCGATTAAAGTCTGGGATCCTTACAACGTCCTCTCTCCGCCGCCGCAACCGCC 400
Query 290 GTCTATCTTCTCTCGAATCGCGTCTGGTGATGAAGATCGAGCTGTGACGGAGGTTTATCT 349
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 401 GTCTATCTTCTCTCGAATCGTGTCTGGTGATGAAGATCGAGCTGTGACAGAGGTTTATCT 460
Query 350 GATTAGCCATGGTGAGTGTGATCTTAATC-TAAGACCTGATTTGATTGGTGGGAGATGTC 408
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 461 GATTAGCCATGGTGAGTCTGATCTTAATCTTAA-ACCTGATTTGATTGGTGGGAGATGTC 519
Query 409 ATGTAGCTGCGCTTACTGGTAATGGTAAACGTCAGGCTAGGGCTCTTGCTGTTTTCTTTA 468
|||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |
Sbjct 520 ATGTAGCTGCTCTTACTGCTAATGGTAAACGTCAAGCTAGGGCTCTTGCTGTTTTCTTCA 579
Query 469 AATCTCAAGGTGTTCGATTCAATTCTGTTT-TCTCTTCTCCTTTGGATCGAGCTAGATCC 527
|||||||||||||||| || ||||| |||| | || || ||| | |||||||||||||||
Sbjct 580 AATCTCAAGGTGTTCGGTTTAATTCGGTTTAT-TCGTCACCTCTAGATCGAGCTAGATCC 638
Query 528 ATGGCTGTTT-TGGTTTGTCAGGAAATGAGTTTTGCGGAGGAGCATGTACAATCGTCAGA 586
|||||||||| | ||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 639 ATGGCTGTTTCT-GTTTGTCAGGAAATGAGTTTTCCGGAGGAGCATGTACAATCTTCGGA 697
Query 587 TGCTATTATTGAGATGAGTTTAGGGGATTGGGAAGGTTGCAATCAAGCAGAGATTTATAG 646
|||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 698 TGCTGTTATTGAGATGAGTTTAGGGGATTGGGAAGGCTGTAATCAAGCAGAGATTTATAG 757
Query 647 TCCCGAAACTTTGAGTTTGATTGAAAGATGCCAGCCTGATTTCACAGCTCCATCTGGAGA 706
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 758 TCCTGAAACTTTGAGTTTGATTGAAAGGTGCCAACCTGATTTCACAGCTCCATCTGGAGA 817
Query 707 ATCACTCAGGCAAGTAGAGTTTCGAATGGTTCAGTTTATAAACGGGACAGTCTCAGGACT 766
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 818 ATCACTGAGGCAAGTAGAGTTTCGAATGGTTCAGTTTCTAAACGGGACAGTCTCAGGAGT 877
Query 767 TGCAGAGAAGCTCAGGTCAGATTATTCGTCCACTGCGAATCACAATGAAACCCATGAGCG 826
|||||||||||| |||||||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 878 TGCAGAGAAGCTTAGGTCAGATTATTCTTCCACTACGAATCACAATGAAACTCATGAGCG 937
Query 827 TGATGGTGGT-TCGTCACTTCCTTCGACTAACTGGGACTTACTTCACAAGCATCGTCCCA 885
|||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 938 TGATGGTGGTGT-GTCACTTGCTTCGACTAACTGGGACTTACTACACAAGCATCGTCCCA 996
Query 886 GTCTTACAAGGAAGAAATCTGGTAAAAGCAGACTTCAAGTAATGACCAATCACGAACCTG 945
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 997 GTCTTACAAGGAAGAAATCTGGTAAAAGCAGGCTTCAAGTGATGACTAATCACGAACCTG 1056
Query 946 AAGATG-AA--TCCCCAAGGGAAGATGTTAATCGCAATCACAATGACCTAAGTGATTCCT 1002
| |||| || |||||||||||||| ||||||| ||||||| ||||||||||||||| |
Sbjct 1057 ACGATGGAAACTCCCCAAGGGAAGAAGTTAATCATAATCACACTGACCTAAGTGATTCGT 1116
Query 1003 CTTCGTTAATCACAAATTGCATCGGGGTTTTCACGCATTCTTTGCCTATAAAGTGTCTTC 1062
|||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1117 CTTCCTTAATCTCGAATTGTGTCGGGGTTTTCACGCATTCTTTGCCTATAAAGTGTCTTT 1176
Query 1063 TAACCGGAATCCTCGGTTGCAGTCCGGTAATGACTCATAAAATCTGTGTAGAAGACTCTT 1122
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1177 TAACCGGAATCCTCGGTTGCAGTCCGGTAATGACTCATAAGATCTGTGTAGAAGACTCTT 1236
Query 1123 CAGTGACTGTGTTACAGCATTCGTGGAGAAATGGGTGGCAGATCAAACGAATGAATGATA 1182
|||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1237 CAGTGACTGTGTTACAACATTCATGGAGAAACGGGTGGCAGATCAAACGAATGAATGATA 1296
Query 1183 CTACTCATCTTAGATTGTTGTAGCTTTATTTACCGATAAATTATT 1227
|| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1297 CTGCTCATCTTAGATTGTTGTAACTTTATTTACCGATAAATTATT 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5