BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936407

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G26880.1 | Symbols:  | Plant self-incompatibility protein S1...   353    5e-97
  AT3G29077.1 | Symbols:  | Pseudogene of AT3G26880; self-incompa...   250    6e-66


> AT3G26880.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr3:9906334-9906735 REVERSE LENGTH=402
Length=402

 Score =  353 bits (191),  Expect = 5e-97
 Identities = 240/264 (91%), Gaps = 2/264 (1%)
 Strand=Plus/Plus

Query  46   AATCCAAAAACGACGACATTGGTATAAAATATCTCAAATTTGGTGAAATTATGTCATTCA  105
            ||||||||||| |||| |||||| |||||||||||||| |||| ||| ||||||||||||
Sbjct  134  AATCCAAAAACAACGATATTGGTGTAAAATATCTCAAAATTGGAGAAGTTATGTCATTCA  193

Query  106  GCTTCAGGACCAACTTTTGGGGGACGACGGAATTTTGGTGCGACGTATATAAAGGACCTG  165
            |||||| ||||||||||||||| |||||||||||||||||| || |||||||||||||||
Sbjct  194  GCTTCAAGACCAACTTTTGGGGAACGACGGAATTTTGGTGCAACTTATATAAAGGACCTG  253

Query  166  ATTATAAGCGTTTTAGAGGTTTTACTGCATATCAAGCGAGCA-GTTTGTTCGTTAAGGAC  224
            |||||||||||| ||||||| |||||||||||||||| |  | |||||||||  || || 
Sbjct  254  ATTATAAGCGTTATAGAGGTATTACTGCATATCAAGCTA-TAGGTTTGTTCGCCAAAGAT  312

Query  225  GGATCATCGTATAATTGGTTAGCTAGAGATGATGGAATCTATTTTCATAAGGATTCGTTG  284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  313  GGATCATCGTATAATTGGTTAGCTAGAGATGATGGAATCTATTTTCATAAGGATTCGTTG  372

Query  285  CCTAGTTACTATAAGTTTTATTGG  308
            ||||| ||||||||   |||||||
Sbjct  373  CCTAGCTACTATAAAACTTATTGG  396


> AT3G29077.1 | Symbols:  | Pseudogene of AT3G26880; self-incompatibility 
protein-related | chr3:11063493-11063884 FORWARD 
LENGTH=392
Length=392

 Score =  250 bits (135),  Expect = 6e-66
 Identities = 218/257 (85%), Gaps = 10/257 (4%)
 Strand=Plus/Plus

Query  63   ATTGGTATAAAATATCTCAAATTTGGTGAAATTATGTCATTCAGCTTCAGGACCAACT-T  121
            ||||||||||||||| ||||| |||| ||| |||||||||| ||||||| || ||| | |
Sbjct  141  ATTGGTATAAAATATATCAAAATTGGAGAAGTTATGTCATTAAGCTTCAAGA-CAAATGT  199

Query  122  TTGGGGGACGAC-GGAATTTTGGTGCGACGTATATAAAGGACCTGA-TTATAAGCGTTTT  179
            |||  | || ||  | ||||||| ||||  |||||||| || || | | |||||| ||||
Sbjct  200  TTGTAGAACCACATG-ATTTTGGAGCGATATATATAAAAGATCT-AGTGATAAGCATTTT  257

Query  180  AGAGGTTTTACTGCATATCAAGCGAGC-AG-TTTGTTCGTTAAGGACGGATCATCGTATA  237
            | |||||||||||||||||||||  || || |||||||||||| ||  ||||||||||||
Sbjct  258  ATAGGTTTTACTGCATATCAAGC--GCAAGCTTTGTTCGTTAAAGATAGATCATCGTATA  315

Query  238  ATTGGTTAGCTAGAGATGATGGAATCTATTTTCATAAGGATTCGTTGCCTAGTTACTATA  297
            ||||||||  ||| ||||||||||||||||||||||| | || |||||||||||||||||
Sbjct  316  ATTGGTTATTTAGGGATGATGGAATCTATTTTCATAACGCTTTGTTGCCTAGTTACTATA  375

Query  298  AGTTTTATTGGAAATAA  314
            |||||||||||||||||
Sbjct  376  AGTTTTATTGGAAATAA  392



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15583002190


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5