BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936415
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26950.1 | Symbols: | unknown protein; Has 27 Blast hits to... 2750 0.0
> AT3G26950.1 | Symbols: | unknown protein; Has 27 Blast hits
to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:9941138-9943480 REVERSE LENGTH=1780
Length=1780
Score = 2750 bits (1489), Expect = 0.0
Identities = 1618/1682 (96%), Gaps = 2/1682 (0%)
Strand=Plus/Plus
Query 2 AAGAAACGATGAAGAAGAGATGAAACGCGGTGGAACAAGACGGAAGCGATTGTTCGGGAA 61
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 51 AAGAAACGATGAGGAAGAGATGAAACGCGGTGGAACAAGACGGAAGCGGTTGTTCGGGAA 110
Query 62 GACGATTCTCTTATCATCCGTAGTTTTCTTCATCGGTTTTGGTTTGTTGTTGCTCACCCT 121
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 111 GACGATTCTCTTATCATCTGTGGTTTTCTTCATCGGTTTTGGTTTGTTGTTGCTCACGCT 170
Query 122 CCGTTCCGTGGATCCTAATTCGTCTTTCATCGATGACGACGATGACGAGTCCGAATCCGA 181
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 171 CCGTTCCGTAGATCCTAATTCGTCTTTCATCGACGACGACGATGACGAGTCCGAATCCGA 230
Query 182 GGACACTGCGAGATGGAGCAATTCTTCTTCGATTGGAGAGGCTATGGTCGATGGAGGTAG 241
||| || ||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 231 GGAGGCTTCGAGATGGAGCAACTCTTCTTCGATTGGAGAGGCTATGGTCGATGGAGCTAA 290
Query 242 GCTCTGCGCGACGGTAGAAGAGATGGGAAGCGAGTTCGATGGTGGTTTCGTGGATCAAAG 301
|||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 291 ACTCTGCGCGACGGTAGAAGAAATGGGAAGCGAATTCGATGGTGGTTTCGTAGATCAAAG 350
Query 302 TCTCAGAGTTCGAGATGTTATCCGTCGCCATTTTCAAATCAATGGAGCTTCAGCGATTCG 361
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 351 TCTCAGAGTTCGAGATGTTATCCATCGCCATTTTCAAATCAATGGAGCTTCAGCGATCCG 410
Query 362 TGAGCTACCTCCGGAGCAATTTTGTAGACATGGTTATGTTCTTGGGAAAACAGCAGAAGC 421
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 411 TGAGCTGCCTCCGGAGCAATTTTGTAGACATGGTTATGTTCTAGGGAAAACAGCAGAAGC 470
Query 422 TGGATTCGGAAACGAAATGTATAAGATCTTAACCTCAGCAGCGTTGAGCATAATGTTGAA 481
|||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 471 TGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAA 530
Query 482 CAGATCATTGATCATTGGCCAGACCAGGGGGAAATATCCTTTCGGTGATTACATTGCTTA 541
|||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 531 CAGATCCTTGATCATTGGCCAGACCAGGGGGAAGTATCCTTTTGGTGATTACATTGCTTA 590
Query 542 CTCAAATGCTACATTTACAATGAGTGAAGTGAAGCATTTGTGGCGACAAAATGGCTGCGT 601
|||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 591 CTCAAATGCTACGTTTACAATGAGTGAAGTCAAGCATCTGTGGCGACAAAATGGCTGCGT 650
Query 602 GAAGAAATACAAAAGGCGGCTTGTAATGAGATTGGATGATTTCGAGAAACCGGCTAAGAG 661
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 651 GAAGAAATACAAAAGGCGGCTTGTTATGAGATTGGATGATTTCGAGAAACCGGCTAAGAG 710
Query 662 TAATG-TCTTATGCAGTAATTGGAAGAAATGGGAAGAAGCTATTATATGGTTTCAAGGCA 720
||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 711 TAATGTTC-TATGCAGTAATTGGAAGAAGTGGGAAGAAGCTATTATATGGTTTCAAGGCA 769
Query 721 CGACAGACGCTGTGGCAGCTCAGTTTTTCCTCAAGAATGTGCATCCTGAGATGAGAGCTG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CGACAGACGCTGTGGCAGCTCAGTTTTTCCTCAAGAATGTGCATCCTGAGATGAGAGCTG 829
Query 781 CTGCATTTGAGCTATTTGGAGGGCAAGGAAACTCGGCACCACGAGGTAATGTGTTTGGAG 840
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 830 CTGCATTTGAGCTATTTGGAGAGCAAGGAAACTCGGCACCACGAGGTAATGTGTTTGGAG 889
Query 841 AGTTGATGATGAGTCTTATATCTCCCACGAAAGATGTTAAAGAAGCAGTGGACTGGGTTC 900
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 890 AGTTGATGATGAGTCTCATATCTCCCACAAAAGATGTTAAAGAAGCAGTGGACTGGGTTC 949
Query 901 TACACGAGACTGGGGATCCTGATATTTCGGTGCACATGCGAATGTTGATGAGCAAATCTG 960
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 950 TACACGAGACTGGGGATCCTGATATTTCAGTGCACATGCGAATGTTGATGAGCAAATCTG 1009
Query 961 TTAGACCTATGCGTGCAGCGATAAACTGTTTAGGGAAAGCAATTAACAGACTTGGCATAT 1020
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1010 TTAGACCTATGCGTGCAGCGATAAACTGTCTAGGGAAAGCAATTAACAGACTTGGCATAC 1069
Query 1021 CGAACCCGAGAGTGGTTATAGTGTCTGACACTCCATCTGTAGTGAAAATTATCAAAACAA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 CGAACCCGAGAGTGGTTATAGTGTCTGACACTCCATCTGTAGTGAAAATTATCAAAACAA 1129
Query 1081 ATATCAGCACCATTGCTGAGGTTCTACATTTTGACTACAAGCTTTTCCGAGGTGATATCG 1140
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1130 ATATCAGCACCATTGCAGAGGTTCTACATTTTGACTATAAGCTTTTCCGAGGTGATATCG 1189
Query 1141 CTCAACGCGGCCGTGGATTACCAATGTTAGATTTCAGAATAAAGGATTGGGGTCCTGCAC 1200
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CTCAACGTGGCCGCGGTTTACCAATGTTAGATTTCAGAATAAAGGATTGGGGTCCTGCAC 1249
Query 1201 CGAGGTGGGTTGCATTTGTAGATTTCTTCCTCGCGTGCCGTGCGAAACATGCGGTGATCT 1260
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1250 CGAGGTGGGTTGCATTTGTAGATTTCTTCCTCGCGTGCCGTGCTAAACATGCGGTGATCT 1309
Query 1261 CCGGTGCTAACAGGCGAGTTGGGACTACTTATGCTCAGTTGGTTGCTGCATTAGCCGCTG 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1310 CCGGTGCTAACAGGCGAGTTGGGACTACTTATGCTCAGTTGGTTGCTGCATTAGCCGCGG 1369
Query 1321 CAAACAGTCTCAAGGATGGTTCGAGCAACTCAAGCTTTGCTTTCCTGAGTAGTTTCCAGA 1380
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1370 CAAACAGTCTCAAGGATGGTTCGAGCAACTCAAGCTTTGCGTTCCTGAGTAGTTTCCAGA 1429
Query 1381 GCAATTTGCTAGCAGACGGTCTGAAGAACCAGGTAGGTTGGGGACATGTCTGGAACCGAT 1440
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 GCAATTTGTTAGCAGATGGTCTGAAGAACCAGGTAGGTTGGGGACATGTCTGGAACCGAT 1489
Query 1441 ACGCTGGACCGTTAAGCTGTCCAAAACAGCCAAACCAATGCGCCTTCACGCCGCTTGCAC 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 ACGCTGGACCGTTAAGCTGTCCAAAACAGCCAAACCAATGCGCCTTCACGCCGCTTGCAC 1549
Query 1501 CTCCTGGTTGGTGGGACGGTTTGTGGCAATCACCCATCCAACGGGACACTCGTAGGCTTG 1560
|||||||||||||||||||| | |||||||| ||||||| ||||||||||||||||||||
Sbjct 1550 CTCCTGGTTGGTGGGACGGTATATGGCAATCGCCCATCCCACGGGACACTCGTAGGCTTG 1609
Query 1561 CGGCTTTCGGCATTGAGCTTTCCGGGATTGGCACTGTTAACGAAGACCGGTTCCACACCT 1620
| |||||||||||||||||||||||| |||| || ||||||||||||||||||||| |||
Sbjct 1610 CAGCTTTCGGCATTGAGCTTTCCGGGTTTGGTACGGTTAACGAAGACCGGTTCCACGCCT 1669
Query 1621 TTTGTAGTGCCAAGAAAGAGTACTTAAGCACTGTAACAATCATATAATGACTTCTTCaaa 1680
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1670 ATTGTAGCGCCAAGAAAGAGTACGTAAGCACTGTAACAATCATATAATGACTTCTTGAAA 1729
Query 1681 aa 1682
||
Sbjct 1730 AA 1731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83383105245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5