BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936422
Length=2076
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27020.1 | Symbols: YSL6 | YELLOW STRIPE like 6 | chr3:99613... 3463 0.0
AT1G48370.1 | Symbols: YSL8 | YELLOW STRIPE like 8 | chr1:17874... 91.6 3e-17
> AT3G27020.1 | Symbols: YSL6 | YELLOW STRIPE like 6 | chr3:9961319-9964597
REVERSE LENGTH=2471
Length=2471
Score = 3463 bits (1875), Expect = 0.0
Identities = 2005/2070 (97%), Gaps = 0/2070 (0%)
Strand=Plus/Plus
Query 7 CATTGAATTAGCTTAAACATGGGGACGGAGATCCCTAGATCGGCGGAGATATCGGAAGCA 66
||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 119 CATTGAATTAGCTAAAACATGGGGACGGAGATCCCTAGATCGGCGGAGATATCAGAGGCA 178
Query 67 TTGTTACCGTCGGAATCTGAGAAAACCGCGACGGCGGCGGAGGAGCATGTACCTGAGTGG 126
|||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 179 TTGTTACCACCGGAATCTGAGAAAACCGTGACGGCGACGGAGGAGCATGTACCTGAGTGG 238
Query 127 AAAGAGCAGATAACGATACGAGGATTGACCGTGAGTGCGTTGCTCGGGACTTTGTTCTGT 186
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 AAAGAGCAGATAACGATTCGAGGATTAACCGTGAGTGCGTTGCTCGGGACTTTGTTCTGT 298
Query 187 ATCATTACTCATAAACTCAATCTGACGGTTGGAATCATTCCGTCGTTGAACGTCGCTGCG 246
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 ATCATTACTCATAAACTAAATCTGACGGTTGGAATCATCCCGTCGTTGAACGTCGCTGCG 358
Query 247 GGATTACTCGGATTCTTCTTCGTTAAGTCGTGGACTGGTTTCTTATCGAAGCTAGGGTTT 306
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGATTACTCGGTTTCTTCTTCGTTAAGTCGTGGACTGGTTTCTTATCGAAGCTAGGGTTT 418
Query 307 ACAGTGAAGCCTTTCACTAAACAAGAGAACACCGTTATTCAGACTTGTGTTGTTGCTTGC 366
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 419 ACAGTGAAGCCTTTCACTAAGCAAGAGAACACCGTTATTCAGACTTGTGTTGTCGCTTGC 478
Query 367 TATGGCCTTGCCTTCAGCGGAGGATTTGGTTCATATTTGATTGCTATGGATGAGAAGACA 426
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TATGGCCTCGCCTTTAGCGGAGGATTTGGTTCATATTTGATTGCTATGGATGAGAAGACA 538
Query 427 TATAAGCTCATTGGTGCTGATTATCCTGGAAACCATGCTGAAGATGTTATAAATCCAGGA 486
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 539 TATAAGCTCATTGGTGCTGATTATCCTGGAAACCATGCAGAAGATGTTATAAATCCAGGA 598
Query 487 TTGTGGTGGATGATTGGGTTTTTATTTGTAGTCAGCTTCTTGGGGCTCTTTAGTCTTGTT 546
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 599 TTGTGGTGGATGATTGGGTTTTTATTTGTAGTCAGCTTCTTGGGACTCTTTAGTCTCGTT 658
Query 547 CCGTTACGCAAGGTGATGGTTTTGGACTACAAACTTACTTATCCCAGTGGGACCGCCACA 606
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 659 CCGTTACGCAAGGTGATGGTTTTGGACTACAAACTTACTTATCCTAGTGGAACCGCCACA 718
Query 607 GCAATGTTGATTAACAGCTTCCACACCAACACTGGAGCTGAGCTTGCAGGGAATCAGGTT 666
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 719 GCAATGTTGATTAATAGCTTCCACACCAACACTGGAGCTGAGCTTGCAGGGAACCAGGTT 778
Query 667 AAATGTCTTGGAAAATACCTGAGCCTTAGCTTAATTTGGAGTTGTTTCAAGTGGTTCTTC 726
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 779 AAATGTCTTGGAAAATACCTGAGCCTTAGCTTAATTTGGAGTTGTTTCAAATGGTTCTTC 838
Query 727 AGTGGTATTGGAGATGCATGTGGATTTGATAACTTCCCCACCCTTGGTTTGACGCTATTC 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 839 AGTGGTATTGGAGATGCATGTGGATTTGATAACTTCCCCACCCTTGGTTTGACGTTATTC 898
Query 787 AAGAACACGTTTTACTTTGACTTCAGTCCTACTTATATTGGATGCGGTCTTATATGCCCC 846
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 899 AAGAACACGTTTTACTTTGACTTCAGTCCTACTTATATTGGATGCGGCCTTATATGCCCC 958
Query 847 CATATAGTGAACTGCTCAGTTCTTCTTGGTGCGATCATCTCTTGGGGGATTCTGTGGCCA 906
||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 959 CATATAGTGAACTGCTCGGTTCTTCTCGGTGCGATCATTTCTTGGGGGATTCTATGGCCA 1018
Query 907 TTTGTATCACAGCATGCTGGGGATTGGTATCCTGCTGACCTTGGGTCCAACGATTTCAAA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTTGTATCACAGCATGCTGGGGATTGGTATCCTGCTGACCTTGGGTCCAACGATTTCAAA 1078
Query 967 GGTCTCTACGGGTATAAGGTCTTTATCGCCATTGCCATTATCCTTGGTGACGGTCTTTAC 1026
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1079 GGTCTCTACGGGTATAAGGTCTTTATCGCCATTGCCATTATCCTTGGTGATGGTCTTTAC 1138
Query 1027 AATCTTGTCAAGATCATCGCTGTCACTGTGAAGGAAATATGCAGCAGTAGGTCTAGACGA 1086
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1139 AATCTTGTCAAGATCATCGCTGTCACTGTGAAGGAATTATGCAGCAGCAGGTCTAGACGA 1198
Query 1087 CTCAATCTACCCATTGTTACCGACGTTGTAGATGACAGCGAAGCCTCTGAGATACTGCTG 1146
||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||
Sbjct 1199 CTCAATCTACCCATTGTTACCGACGGTGTAGATGACAGTGAAGCTTCTGAGATACTGCTG 1258
Query 1147 GTGAAGAAGAAAAGAGATGAAGTATTTCTGAAGGACCGTATACCCCTTGAATTTGCGGTT 1206
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1259 GTGAAGAAGAAAAGAGATGAAGTGTTTCTGAAGGACCGTATACCCCTTGAATTTGCGATT 1318
Query 1207 GCTGGTTATGTGGGTCTTGCAGCAATCTCAACTGCCACAATCCCAATAATATTTCCACCA 1266
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1319 GCTGGTTATGTGGGTCTTGCAGCTATCTCAACTGCCACAATCCCAATAATATTTCCACCA 1378
Query 1267 TTGAAATGGTACTTTGTCCTGTGTTCTTATTTCATTGCACCTGCTCTTGCCTTCTGCAAC 1326
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1379 CTGAAATGGTACTTTGTCCTGTGTTCTTATTTCATTGCACCCGCTCTCGCCTTCTGCAAC 1438
Query 1327 TCTTATGGAACGGGGCTCACAGACTGGAGCTTAGCATCAACCTATGGAAAGATCGGTCTT 1386
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1439 TCTTATGGAACGGGGCTCACAGACTGGAGCCTAGCATCAACCTATGGAAAGATCGGTCTT 1498
Query 1387 TTCATAATCGCTTCAGTAGTAGGAAGTGATGGTGGTGTCATTGCGGGTCTAGCTGCCTGT 1446
|||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1499 TTCATAATCGCTTCCGTTGTAGGAAGTGATGGTGGTGTCATTGCGGGTTTAGCTGCCTGT 1558
Query 1447 GGTGTTATGATGTCAATCGTCTCCACCGCAGCTGATCTCATGCAAGACTTCAAAACAGGT 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GGTGTTATGATGTCAATCGTCTCCACCGCAGCTGATCTCATGCAAGACTTCAAAACAGGT 1618
Query 1507 TACCTCACTTTATCATCTGCAAAGTCCATGTTTGTAAGCCAGCTCGTGGGAACCGCAATG 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TACCTCACTTTATCATCTGCAAAGTCCATGTTTGTAAGCCAGCTCGTGGGAACCGCAATG 1678
Query 1567 GGCTGTGTAATTGCTCCGCTCACATTCTGGCTGTTCTGGACTGCCTTTGACATTGGAGAT 1626
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 GGCTGTGTAATCGCTCCACTCACATTCTGGCTGTTCTGGACTGCCTTTGACATTGGAGAT 1738
Query 1627 CCCAATGGTCCCTACAAAGCACCTTACGCAGTGATTTTCCGTGAAATGGCGATTCTCGGT 1686
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CCCAATGGTCCGTACAAAGCACCTTACGCAGTGATTTTCCGTGAAATGGCGATTCTCGGA 1798
Query 1687 ATTGAGGGCTTTGCTGAACTGCCTAAGCACTGTTTGGCTCTTTGTTACGGGTTTTTCATT 1746
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 ATTGAGGGCTTTGCTGAATTGCCTAAGCACTGTTTGGCTCTTTGTTACGGGTTTTTCATA 1858
Query 1747 GCAGCTTTGATTGTGAATCTCTTAAGAGATATTACACCACCTAAAATCTCTCAGTTCATC 1806
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1859 GCAGCTTTGATTGTGAATCTCTTAAGAGATATTACACCGCCTAAGATCTCTCAGTTCATC 1918
Query 1807 CCGATCCCAATGGCAATGGCTGTCCCATTCTACATTGGAGCTTACTTTGCCATTGACATG 1866
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1919 CCGATCCCAATGGCAATGGCTGTCCCATTCTACATTGGAGCTTACTTCGCCATTGACATG 1978
Query 1867 TTTGTTGGGACTGTGATATTGTTCATATGGGAGCGGATCAACAGGAAAGATGCAGACGAC 1926
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||
Sbjct 1979 TTTGTTGGGACTGTGATATTGTTCGTATGGGAACGGATCAACAGGAAAGATGCAGAGGAC 2038
Query 1927 TTTGCGGGTGCAGTAGCATCAGGACTGATCTGTGGGGATGGGATCTGGACAATTCCATCC 1986
||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 2039 TTTGCAGGTGCAGTAGCATCAGGACTGATCTGTGGTGATGGGATCTGGACTATACCATCC 2098
Query 1987 GCAATCCTTTCGATCTTAAGGATCAACCCTCCCATTTGTATGTACTTTGGACCGTCCTCA 2046
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 GCAATCCTTTCAATCTTAAGGATCAACCCTCCCATTTGTATGTACTTTGGACCGTCCTCA 2158
Query 2047 GCAAGGTAAAGATGCCACTGTGGTCATAAT 2076
||||| || |||||||||||||||||||||
Sbjct 2159 GCAAGATAGAGATGCCACTGTGGTCATAAT 2188
> AT1G48370.1 | Symbols: YSL8 | YELLOW STRIPE like 8 | chr1:17874512-17877397
FORWARD LENGTH=2364
Length=2364
Score = 91.6 bits (49), Expect = 3e-17
Identities = 72/82 (88%), Gaps = 5/82 (6%)
Strand=Plus/Plus
Query 316 CCTTTCACTAA-ACAAGAGAACACCGTTATTCAGACTTGTGTTGTTGCTTGCT-ATGGCC 373
||||| || || |||||||||||||||||||||||||||||| ||||||| || | ||
Sbjct 443 CCTTT-AC-AAGACAAGAGAACACCGTTATTCAGACTTGTGTAGTTGCTTCCTCA-GGAA 499
Query 374 TTGCCTTCAGCGGAGGATTTGG 395
||||||| ||||||||||||||
Sbjct 500 TTGCCTTTAGCGGAGGATTTGG 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102911117250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5