BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936437
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27110.1 | Symbols: | Peptidase family M48 family protein |... 1701 0.0
AT3G27120.1 | Symbols: | P-loop containing nucleoside triphosp... 161 1e-38
> AT3G27110.1 | Symbols: | Peptidase family M48 family protein
| chr3:9997895-10000230 FORWARD LENGTH=1395
Length=1395
Score = 1701 bits (921), Expect = 0.0
Identities = 1023/1074 (95%), Gaps = 0/1074 (0%)
Strand=Plus/Plus
Query 1 CTTACGCACCTCTCTTCTCTCATGGCGGTATCAGTCTCATCTCCGGTTTTGTCCCTCTGT 60
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 91 CTTACGCACCTCTCTTCTCTCATGGCGGTTTCAGTCTCAGCTCCGGTTTTGTCCCTCTGT 150
Query 61 TACAATCAGAGCGGTGAATTGTCTAGTCGTTTGGGATATAGACTACCGAAGAAAGTGGGA 120
|||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 151 TACAATCAGAGCGGCGAATTGTCTCGTAGTTTGGGATATAGACTACCGAAGAAAGTGGGA 210
Query 121 TTTAGCTCTAGTCGCCGTTCAGTGAGTTATATCGGTTTCGGTACGGAGAAAGTTGGAAGA 180
||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 211 TTTAGCTCTGGTCGTCGTTCAGTGAGTTATATCGGTTTCGGTGCGGAGAAAGTTGGAAGA 270
Query 181 TTTAGGGTTAGGGTTCCGATTTGCAGAGCTGTGCCTCCTCTGTTGTTCAAAGATCTTGAT 240
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 271 TTTAGGGTTAGGGTTCCGATTTGCAGAGCTGTACCTCCTCTCTTGTTCAAAGATCTCGAT 330
Query 241 GCTGATGATTTCCGTCATCCTTTGGATAAGCAGAACACTTTGTTACTAAGGGCGATACCG 300
|||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 331 GCTGATGATTTCCGACATCCTTTTGATAAGCAGAACACGTTGTTACTAAGGGCTATACCG 390
Query 301 GGGTTGAACGAATTCGGCAAAGCTCTTTTAGGGTCAATGACGGAACAGATTATGCTTCTT 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 391 GGGTTGAACGAATTCGGCAAAGCTCTTTTAGGGTCAATGACGGAGCAGATTATGCTTCTT 450
Query 361 GAGAACATTGGGACTTCTGTTCTTGTTTCCAAGAATCAGCTCTCTGATCTTCACGGTTTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GAGAACATTGGGACTTCTGTTCTTGTTTCCAAGAATCAGCTCTCTGATCTTCACGGTTTG 510
Query 421 TTGGTTGAGGCTGCTGAGATTTTGAGCATAGAGGCTCCTGATCTATATGTGCGACAAAGT 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 511 TTGGTTGAGGCTGCTGAGATTTTGAATATAGAGGCTCCTGATCTATATGTGCGACAGAGT 570
Query 481 CCTGTTCCTAATGCGTATACACTGGCAATAAGCGGTAAAAAGCCTTTTATTGTTGTTCAT 540
|||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 571 CCTGTTCCTAATGCGTATACGCTGGCAATAAGCGGTAAGAAGCCGTTTATTGTTGTCCAC 630
Query 541 ACCAGCTTGATTGAGCTTCTTACTCGCGCTGAGCTACAGGCTGTCTTGGCGCATGAACTA 600
||||||||||| |||||||||||| |||| ||||||||||||||||| || |||||||||
Sbjct 631 ACCAGCTTGATCGAGCTTCTTACTAGCGCGGAGCTACAGGCTGTCTTAGCCCATGAACTA 690
Query 601 GGCCATCTGAAGTGTGATCATGGCGTGTGGCTCACATTTGCAAACATTCTTACTCTTGGT 660
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 691 GGCCATCTGAAGTGTGATCACGGCGTGTGGCTCACATTTGCAAATATTCTTACTCTTGGG 750
Query 661 GCTTATACAGTTCCTGCTTTTGGGCAAATGATAGCTCGGACTTTGGAAGAACAATTACTT 720
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 751 GCTTATACAGTTCCTGCTTTTGGGCAAATGATAGCTCGAACCTTGGAAGAACAGTTACTT 810
Query 721 CGTTGGCTGCGTTCAGCAGAGCTGACTTGTGATCGCGCAGCACTTCTGGTCGCCCAAGAT 780
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 811 CGTTGGCTACGTTCAGCAGAGCTGACTTGTGATCGCGCAGCACTACTCGTCGCCCAAGAT 870
Query 781 CCAAAGGTTGTTGTATCCGTTCTGATGAAATTAGCCGGAGGATGTCCATCAATTGCTGAT 840
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 871 CCAAAGGTTGTTGTATCTGTTCTGATGAAATTAGCCGGAGGATGTCCATCAATCGCTGAT 930
Query 841 CAGCTAAATGTTGACGCATTTCTAGAACAAGCTCGATCATATGACAAAGCTTCTTCAAGC 900
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 931 CAGCTAAATGTTGACGCATTTCTAGAACAAGCCCGTTCATATGACAAAGCTTCTTCAAGC 990
Query 901 CCCTTGGGATGGTACATAAGAAATGCTCAGACTAGTCAACTTTCGCATCCATTGCCAGTT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 991 CCCTTGGGATGGTACATAAGAAATGCTCAGACTAGTCAACTTTCGCATCCATTGCCGGTT 1050
Query 961 CTTCGTGCACGTGAGATTGATGAATGGTCCAGGAGTCTTGAGTACAGAAGTCTCCTGAAA 1020
||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 1051 CTTCGTGCACGTGAGATTGATGAGTGGTCCAGGAGTCTCGAGTACAAAAGTCTCCTGAAA 1110
Query 1021 CGGGCAAATCGAATAAGCACGGTGCAGAAGGTTTAGTGATGTTGTTAAATATTT 1074
||||||||||||| |||||| || ||||||||||||||| ||||||||| ||||
Sbjct 1111 CGGGCAAATCGAAAAAGCACAGTACAGAAGGTTTAGTGACGTTGTTAAAGATTT 1164
> AT3G27120.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:9999694-10003314
REVERSE LENGTH=1648
Length=1648
Score = 161 bits (87), Expect = 1e-38
Identities = 95/99 (96%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 919 AGAAATGCTCAGACTAGTCAACTTTCGCATCCATTGCCAGTTCTTCGTGCACGTGAGATT 978
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1587 AGAAATGCTCAGACTAGTCAACTTTCGCATCCATTGCCGGTTCTTCGTGCACGTGAGATT 1528
Query 979 GATGAATGGTCCAGGAGTCTTGAGTACAGAAGTCTCCTG 1017
||||| |||||||||||||| ||||||| ||||||||||
Sbjct 1527 GATGAGTGGTCCAGGAGTCTCGAGTACAAAAGTCTCCTG 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52710572250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5