BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936442
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27180.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 2505 0.0
> AT3G27180.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:10026837-10030069
REVERSE LENGTH=1890
Length=1890
Score = 2505 bits (1356), Expect = 0.0
Identities = 1494/1561 (96%), Gaps = 7/1561 (0%)
Strand=Plus/Plus
Query 25 GATGCATTCGTCGAGCCTTTTCTCGTTCAGCTCTCGTTATCCAATCAT-AACCTGCCGCG 83
|||| ||||||||||||||||||||||| || ||||| ||||||||| || ||||||||
Sbjct 10 GATGAATTCGTCGAGCCTTTTCTCGTTCGGCGGTCGTTTTCCAATCATCAA-CTGCCGCG 68
Query 84 TGTCACCTCCTTCCTCGCCTCCCTTCGTCGCTTCCGTTCCTCTTCCGCCGTCAAGCTCCT 143
||||| ||||| | ||| ||||||||||||||||||||||||| |||||||||| |||||
Sbjct 69 TGTCAGCTCCTGCTTCGGCTCCCTTCGTCGCTTCCGTTCCTCTCCCGCCGTCAACCTCCT 128
Query 144 CCGACTCACTAGCTTGCTCTCTCCAATGTCCTCATTTCCAATCGTGCTCAGGTTGTACGC 203
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 129 CCGACTCACTAGCTTGCTCTCTCCAATGTCCTCATTTCCAATCGTGCTCAGGATGTACGC 188
Query 204 AGGAGTTTAATCTCCACCGTCCAGCTGTTGTCGACGAAGCTTCAGGCTTCTTCAAGCGTT 263
| ||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 189 AAGAGTTCAATCTCCATCGTCCAGCTGTTGTCGACGAAGCTTCAGACTTCTTCAAGCGTT 248
Query 264 ACGGCGTCGAAGATTTCACTTTCGATAGTTGTAGACTGTGGGGATGGAGATGCCGAGCAA 323
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 249 ACGGCGTCGATGATTTCACTTTCGACAGTTGTAGACTGTGGGGATGGAGATGCCGAGCAA 308
Query 324 AATTGGCCATTCGTGGCTCATCTGATAATGCATTGATTGGATTGTACCAAGAAGGAACTC 383
||||||| |||||||||| || ||||| ||||| |||||||||||||||||||||||||
Sbjct 309 AATTGGCTGTTCGTGGCTCTTCAGATAACGCATTAATTGGATTGTACCAAGAAGGAACTC 368
Query 384 ACACCGTTGTTGATATTCCTGAATGCAAATCTCATCATCCTAATATTAATGCTGCCATTG 443
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 ACACTGTTGTTGATATTCCTGAATGCAAATCTCATCATCCTAATATTAATGCTGCCATTG 428
Query 444 AGTTACTGAGAGAAGGTATTAAGGTGTTTGATGTTGTGCCATTTGATGAGGATCAGGGCA 503
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 429 AGTTATTGAGAGAAGGTATTAAGGTGTTTGATGTTGTGCCATTTGATGAGGATCAGGGTA 488
Query 504 CTGGGGACTTACGATATGTTCAGATGGCTGTTACAACGCACAGTACAAATCTTCGTGCTC 563
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 489 CTGGGGACTTACGATATGTTCAGATGGCTGTTACGACGCATAGTACAAATCTTCGTGCTC 548
Query 564 CAGAGAGATACAAAAATGGAAAAGTGCAGGTGTCTTTGGTTTGGAACTCGAGAAATGAGA 623
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 549 CAGAGAGATATAAAAATGGAAAAGTGCAGGTGTCCTTGGTTTGGAACTCGAGAAATGAGA 608
Query 624 GATCTCATAATGCAGATAAGTTGCAAGCATTGTCCAGTTACTTGTGGAGAAAGGGTGGAC 683
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 609 GATCTCATAATGCAGATAAGTTGCAAGCATTGTCCACCTACTTGTGGAGAAAGGGTGGAC 668
Query 684 CAAACAGCAAGTTTCACCTGATACATTCTGTCTGGGCTAACTTTCAGACATCAACCAACA 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CAAACAGCAAGTTTCACCTGATACATTCTGTCTGGGCTAACTTTCAGACATCAACCAACA 728
Query 744 ATATAATTTTTGGAAACAGATGGAGGCATCTTTTAGGTGAGAGAGATTTCTGGGAACATG 803
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 ATATAATCTTTGGAAACAGATGGAGGCATCTTTTAGGTGAGAGAGATTTCTGGGAACATG 788
Query 804 TAGGAGGAATTGACATATCCTTGGATCCTTCCAGTTTTGGCCAGGCAAATACACGGGCTT 863
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 789 TAGGAGGAATTGACATATCCTTGGATCCTTCCAGTTTTGGCCAGGCAAATACTCGGGCTT 848
Query 864 TTGATAGCTTGCTTTGGAAACTGCATAAGTATGTTCCTGGTGGATCATCTGTTGCTGATC 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TTGATAGCTTGCTTTGGAAACTGCATAAGTATGTTCCTGGTGGATCATCTGTTGCTGATC 908
Query 924 TATATGCAGGAGCCGGAGTGATTGGATTATCATTAGCTACATCGAGGAAATGCAGGTCTG 983
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 909 TATATGCAGGAGCCGGAGTGATTGGATTATCGTTAGCTACATCGAGGAAATGCAGTTCTG 968
Query 984 TCAAATGCATTGAGGTTAACAAAGAAGCAAGGCTATCTTTTGAGAAAACAATCCAGCGGT 1043
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 969 TCAAATGCATTGAGGTTAACAAAGAAGCAAGGCTGTCTTTTGAGAAAACAATCCAGCGGT 1028
Query 1044 TGCCAAACTCAGTGGATTGTAGCATCAGTTGGCACCATGCAGATGCTTCAGTTAACCCTC 1103
|||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 TGCCGAACTCATTGAATTGCAGCATCAGTTGGCACCATGCAGATGCTTCAGTTAACCCTC 1088
Query 1104 TTTCGTGGATTATAGGATCAGATGTAGTCGTTGTGGATCCTCCTAGGAGAGGTCTCGATG 1163
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1089 TTTCGTGGATAATAGGATCAGATGTAGTCGTTGTGGATCCTCCTAGGAGAGGTCTGGATG 1148
Query 1164 CTTCTCTGCGTCAGATGTTGGAGTCCGTCCCCTCCATTGAGAAAAGAATGAGGTCGTCGT 1223
||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||| |
Sbjct 1149 CTTCTCTCCGTCAGATGCTGGAGTCTGTTCCCTCCATTGAGAAAAGAATGAGGTCGTCAT 1208
Query 1224 CACAGAGTTCAAACTCGAACACAAAAGAGGAGAAGAGGCCGTGGATTTTAAGAGCAAAGG 1283
|||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1209 CACAGAGTTCAAGCTTGAACGCAAAAGAGGAGAAGAGGCCGTGGATTTTAAGAGCAAAGG 1268
Query 1284 AACTTTCAATTCAAGCTGGCAACAAGCTGACCCCTGAGGAGAACAATACACTACCACAAA 1343
||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||
Sbjct 1269 AACTTTCAATTCAAGCTGGCAACAAGCAGACCTCTGAGGAGAACAATACACTACCGCAAA 1328
Query 1344 GACTCATATATATAAGCTGTGGTTGGGAAAGCTTTAAGGAGGACTGCAAGTCGTTATTAT 1403
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1329 GACTCATATATATAAGCTGTGGTTGGGAAAGCTTTAAAGAGGACTGCAAGTCGTTATTAT 1388
Query 1404 CTAGCAGAGCGTGGGAGTTGGAAAAAGCCCATGGCTTCAACTTCTTTCCCGGAACCGACA 1463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 CTAGCAGAGCGTGGGAGTTGGAAAAAGCCCATGGCTTCAACTTCTTTCCCGGAACCGACA 1448
Query 1464 GCATTGAAGTTTTGGCCGTATTCaaaagaagggttgcgatcaagaaaaagaagaaatcag 1523
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1449 GCATTGAAGTTTTGGCCGTATTCAAAAGAAGGGTTGCGAGCAAGAAAAAGAAGAAATCGG 1508
Query 1524 gaataaagaaagtgggaattaagaaagTGCGTGCTACGTAGAATCACAAGACTCTTATTA 1583
||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1509 GAATAAAAAAAGTGGGAATTAAGAAAGTGCGTGCTA---AG--TCACAGGACTCTTATTA 1563
Query 1584 G 1584
|
Sbjct 1564 G 1564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5