BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936444

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G59820.2 | Symbols:  | LETM1-like protein | chr3:22098028-22...   220    9e-57


> AT3G59820.2 | Symbols:  | LETM1-like protein | chr3:22098028-22102164 
REVERSE LENGTH=2696
Length=2696

 Score =  220 bits (119),  Expect = 9e-57
 Identities = 131/137 (96%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  345   TGCTGTCCGAGCTACTCTTTCTTCTCTACCTGACGAGGTTGTTGATACTGTTGGTATTAC  404
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1604  TGCTGTCCGAGCTACTCTTTCTTCTCTACCTGACGAGGTTGTGGATACTGTTGGTATTAC  1663

Query  405   TTCTCTGCCAGCTGAAGACCCTGTTTCTGAGCGAACAAGGACATTAGAGTACCTTGATAT  464
             |||||||||| |||||||||||||||||||||||| | ||| ||||||||||||||| ||
Sbjct  1664  TTCTCTGCCATCTGAAGACCCTGTTTCTGAGCGAAGACGGAAATTAGAGTACCTTGAGAT  1723

Query  465   GCAAGAAGAACTGATCA  481
             |||||||||||||||||
Sbjct  1724  GCAAGAAGAACTGATCA  1740



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26875268645


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5