BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936446
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27190.1 | Symbols: UKL2 | uridine kinase-like 2 | chr3:1003... 2333 0.0
AT5G40870.1 | Symbols: ATUK/UPRT1, UKL1, UK/UPRT1 | uridine kin... 1530 0.0
AT5G34560.1 | Symbols: | pseudogene, uridine kinase/uracil pho... 73.1 7e-12
> AT3G27190.1 | Symbols: UKL2 | uridine kinase-like 2 | chr3:10039234-10043066
REVERSE LENGTH=1871
Length=1871
Score = 2333 bits (1263), Expect = 0.0
Identities = 1422/1499 (95%), Gaps = 9/1499 (1%)
Strand=Plus/Plus
Query 1 TTACATTCAACGGGAAATTCAATGCCGGAAGATTCTAA-TGCGATTGACTATGTCATGGA 59
|||| ||| || |||| |||||||| |||||||| || ||||||||||||||||||||
Sbjct 129 TTACCTTCGCCGAGAAACTCAATGCCAGAAGATTC-AACGGCGATTGACTATGTCATGGA 187
Query 60 GAAGGCATCGGGGCCTCACTTCTCCGGTCTTCGCCTTGACGGTCTTCTCTCTTCTCCGTC 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 188 GAAGGCATCGGGGCCTCACTTCTCCGGTCTTCGCCTTGACGGTCTTCTTTCTTCTCCGTC 247
Query 120 GAAATCCTCCGTCTCTTCTCCTTCTCATTTCCGTTTAAGTAATTCATCTTTTTCCGCTAT 179
||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||
Sbjct 248 GAAATCCTCCGTCTCTTCTCCTTCTCACTTCCGTTTGAGTAATTCTTCTTTTTCGGCTAC 307
Query 180 CGACGATCCCGCCGCTCCTCATCAGCCCTTCGTTATCGGAGTTACTGGTGGTACTGCTTC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 308 CGACGATCCCGCCGCTCCTCATCAGCCCTTCGTTATCGGAGTTACTGGTGGTACAGCTTC 367
Query 240 TGGTAAGACCACGGTGTGTGACATGATTATTCAGCAACTTCATGATCATCGCATTGTTCT 299
||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||| |
Sbjct 368 TGGTAAGACGACGGTATGTGACATGATAATCCAGCAACTTCATGATCATCGCATTGTTTT 427
Query 300 AGTTAACCAGGATTCCTTTTACCGTGGTCTGACATCTGAAGAA-TTGGAGCATGTACAAG 358
||||||||||||||| |||||||||||| |||||||||||||| || |||||||||||||
Sbjct 428 AGTTAACCAGGATTCGTTTTACCGTGGTTTGACATCTGAAGAACTT-GAGCATGTACAAG 486
Query 359 AATATAATTTTGATCATCCTGATGCCTTTGACACTGAGCAGCTTTTGCATTGCGTTGACA 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AATACAATTTTGATCATCCTGATGCCTTTGACACTGAGCAGCTTTTGCATTGCGTTGACA 546
Query 419 CACTCAAGAGTGGGCAACCTTATCAAATTCCAATTTACGACTTCAAAACCCATCAACGTA 478
|||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 547 TACTCAAGAGTGGGCAACCCTATCAAATTCCAATTTATGACTTCAAGACCCATCAACGTA 606
Query 479 AATTAGATGCTTTTCGTCAGGTCAATGCTTGTGATGTCATAATTTTGGAAGGGATTCTAG 538
|| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 607 AAGTAGATGCTTTTCGCCAGGTCAATGCTTGTGATGTCATCATTTTGGAAGGGATTCTAG 666
Query 539 TTTTCCATGACTCGCGAGTTCGGGACTTGATGAATATGAAGATCTTCGTTGACACAGATG 598
|||| |||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 667 TTTTTCATGACTCACGAGTTCGGGACCTAATGAATATGAAGATCTTCGTTGACACAGATG 726
Query 599 CTGATGTGAGGCTTGCTCGCAGAATCAGGCGTGACACGGTTGAGAGGGGCAGGGATGTTG 658
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 727 CTGATGTGAGGCTTGCTCGCAGAATCAGGCGTGACACGGTTGAGAGGGGTAGGGATGTTG 786
Query 659 ATTCTGTGCTTGAACAGTATGCAAAGTTTGTGAAGCCCGCGTTTGATGATTTTGTGCTCC 718
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 787 ACTCTGTGCTTGAACAGTATGCAAAGTTTGTGAAGCCTGCGTTTGATGATTTTGTGCTCC 846
Query 719 CCTCTAAGAAATATGCTGATGTGATCATTCCCCGAGGAGGTGACAATCATGTTGCAGTTG 778
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 847 CCTCAAAGAAATATGCTGATGTGATCATTCCACGAGGAGGTGACAATCACGTTGCAGTTG 906
Query 779 ATTTGATTGTGCAACATATCCACACAAAACTTGGGCAACATGATCTCTGCAAAATCTACC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 ATTTGATTGTGCAACATATCCACACAAAACTTGGGCAACATGATCTCTGCAAAATCTACC 966
Query 839 CAAACGTTTTTGTTATTGAATCAACATTTCAGATTAGAGGCATGCATACACTTATTCGAG 898
|||| ||||||||||||||| ||||||||||||| ||||||||||| || || |||||||
Sbjct 967 CAAATGTTTTTGTTATTGAAACAACATTTCAGATAAGAGGCATGCACACTCTCATTCGAG 1026
Query 899 AGAAGGACATATCAAAACATGACTTTGTGTTTTACTCAGATCGCCTCATTCGTTTGGTTG 958
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1027 AGAAGGACATATCAAAACATGACTTCGTGTTTTACTCAGATCGCCTCATTCGTTTGGTTG 1086
Query 959 TAGAGCACGGTCTTGGCCATTTGCCTTTCACTGAGAAACAAGTAGTTACCCCAACAGGAT 1018
| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1087 TGGAGCATGGTCTTGGCCATTTGCCTTTCACTGAGAAACAAGTAGTTACTCCGACAGGAT 1146
Query 1019 CTGTGTATAGCGGTGTTGATTTCTGCAAGAAACTTTGTGGCGTCTCAGTCATTCGAAGTG 1078
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1147 CTGTGTATAGCGGTGTTGATTTCTGCAAGAAACTCTGTGGGGTCTCAGTCATTCGAAGTG 1206
Query 1079 GTGAAAGCATGGAAAACGCATTACGCGCGTGTTGCAAAGGGATAAAGATAGGGAAGATTC 1138
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1207 GTGAAAGCATGGAAAACGCATTGCGCGCATGTTGCAAAGGGATTAAGATAGGGAAGATTC 1266
Query 1139 TCATCCATCGTGATGGCGACAATGGAATGCAGCTTATATACGAGAAGCTTCCAAGTGATA 1198
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 TCATCCATCGTGACGGAGACAATGGAATGCAGCTTATATACGAGAAGCTTCCAAGTGATA 1326
Query 1199 TCTCCGAGCGCCATGTCCTGCTATTAGATCCTGTTTTAGGCACAGGTAACTCTGCAAACC 1258
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1327 TCTCCGAGCGTCATGTCCTGCTATTAGATCCTGTTTTAGGCACAGGTAACTCTGCAAATC 1386
Query 1259 AGGCGATAGAACTACTCATACAGAAAGGAGTACCTGAAGCCCACATTATATTCTTAAATC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1387 AGGCGATAGAACTACTCATACAGAAAGGAGTACCTGAAGCCCACATTATATTCCTCAATC 1446
Query 1319 TCATCTCAGCGCCCGAAGGAATCCATTGCGTCTGCAAACGGTTTCCAAAGTTGAAGATTG 1378
| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1447 TTATCTCAGCGCCAGAAGGAATCCATTGCGTCTGCAAACGGTTCCCAAAGTTGAAGATTG 1506
Query 1379 TGACTTCAGAAATCGATCAGTGTCTGAACGAAGAGTTTC-GAGTTATACCAGGCTTGGGT 1437
|||| |||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 1507 TGACGTCAGAAATCGATCAGTGTCTGAACGAAGAGTT-CAGGGTTATACCAGGCTTGGGT 1565
Query 1438 GAGTTTGGTGATCGCTACTTTGGTACTGACGAGTAGAA-AC--ACCAAAGTGTTTGTCA 1493
|||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 1566 GAGTTTGGTGATCGCTACTTTGGTACCGACGAGTAGAAGAAGTACCAAAGTGTTTGTCA 1624
> AT5G40870.1 | Symbols: ATUK/UPRT1, UKL1, UK/UPRT1 | uridine kinase/uracil
phosphoribosyltransferase 1 | chr5:16374908-16378652
FORWARD LENGTH=1842
Length=1842
Score = 1530 bits (828), Expect = 0.0
Identities = 1265/1474 (86%), Gaps = 38/1474 (3%)
Strand=Plus/Plus
Query 16 AATTCAATGCCGGAAGATTCTAATGCGATT-GACTATGTC-ATGGAGAAGGCATCGGGGC 73
||| ||||||||||||||||| | | || ||||| | | |||||||||||||| ||||
Sbjct 108 AATCCAATGCCGGAAGATTCTTCTTC-TTTAGACTACG-CGATGGAGAAGGCATCAGGGC 165
Query 74 CTCACTTCTCCGGTCTTCGCCTT-GACGGTC-T-TCTC-TCTTCTCCGTCGAAATCCTCC 129
||||||||||||||||||| ||| ||||| | | |||| |||||||| | || ||||||
Sbjct 166 CTCACTTCTCCGGTCTTCG-CTTCGACGGCCTTCTCTCTTCTTCTCCACCCAATTCCTCC 224
Query 130 GTCTCTTCTCCTTCTCATTTCCGTTTAAG-TAATTCATCTT-TT-TCCG-CTATC-GACG 184
| || ||| | | ||| |||| | || | ||| |||| || |||| || || ||
Sbjct 225 G--TCGTCT-C-T-TCA-CTCCG-ATCAGCTGTTTCTTCTTCTTCTCCGTCT-TCTTCCG 276
Query 185 ATCCCGCCGCTCCTCATCAGCCCTTCGTTATCGGAGTTACTGGTGGTACTGCTTCTGGTA 244
|||||| || ||| | ||||||||| ||||||| ||| |||||||||| ||||||||||
Sbjct 277 ATCCCGAAGCGCCTAAGCAGCCCTTCATTATCGGGGTTTCTGGTGGTACGGCTTCTGGTA 336
Query 245 AGACCACGGTGTGTGACATGATTATTCAGCAACTTCATGATCATCGCATTGTTCTAGTTA 304
|||||||||| ||||||||||| || |||||||||||||| ||||| | ||| ||||||
Sbjct 337 AGACCACGGTCTGTGACATGATAATCCAGCAACTTCATGACCATCGTGTCGTTTTAGTTA 396
Query 305 ACCAGGATTCCTTTTACCGTGGTCTGACATCTGAAGAATTGGAGCATGTACAAGAATATA 364
| |||||||||||||| |||||| |||||||||| || ||| ||| ||| ||||| ||||
Sbjct 397 ATCAGGATTCCTTTTATCGTGGTTTGACATCTGAGGAGTTGCAGCGTGTGCAAGAGTATA 456
Query 365 ATTTTGATCATCCTGATGCCTTTGACACTGAGCAGCTTTTGCATTGCGTTGACACACTCA 424
| ||||||||||||||||| |||||||||||||||||||||||||| | ||| || ||||
Sbjct 457 ACTTTGATCATCCTGATGCGTTTGACACTGAGCAGCTTTTGCATTGTGCTGAGACTCTCA 516
Query 425 AGAGTGGGCAACCTTATCAAATTCCAATTTACGACTTCAAAACCCATCAACGTAAAT-TA 483
|||| |||||||| |||||| ||||||| || ||||| || || |||||||||| || |
Sbjct 517 AGAGCGGGCAACCCTATCAAGTTCCAATCTATGACTTTAAGACTCATCAACGTAGATCT- 575
Query 484 GATGCTTTTCGTCAGGTCAATGCTTGTGATGTCATAATTTTGGAAGGGATTCTAGTTTTC 543
||| |||| || ||||||||||||| |||||| ||||| |||||||||||||||||||||
Sbjct 576 GATACTTTCCGCCAGGTCAATGCTTCTGATGTAATAATATTGGAAGGGATTCTAGTTTTC 635
Query 544 CATGACTCGCGAGTTCGGGACT-TGATGAATATGAAGATCTTCGTTGACACAGATGCTGA 602
|||||||| ||||||| ||| | ||||||||||||||||||| ||||| |||||||||||
Sbjct 636 CATGACTCACGAGTTC-GGAATCTGATGAATATGAAGATCTTTGTTGATACAGATGCTGA 694
Query 603 TGTGAGGCTTGCTCGCAGAATCAGGCGTGACACGGTTGAGAGGGGCAGGGATGTTGATTC 662
||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||
Sbjct 695 TGTAAGGCTTGCTCGCAGAATTAGGCGTGACACAGTTGAGAGGGGTAGGGATGTCAATTC 754
Query 663 TGTGCTTGAACAGTATGCAAAGTTTGTGAAGCCCGCGTTTGATGATTTTGTGCTCCCCTC 722
||||||||||||||||||||||||||||||||| || |||||||| || |||||||| ||
Sbjct 755 TGTGCTTGAACAGTATGCAAAGTTTGTGAAGCCGGCATTTGATGACTTCGTGCTCCCTTC 814
Query 723 TAAGAAATATGCTGATGTGATCATTCCCCGAGGAGGTGACAATCATGTTGCAGTTGATTT 782
|||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 815 AAAGAAATATGCTGACGTGATCATTCCTCGAGGAGGTGATAATCACGTTGCAGTCGATTT 874
Query 783 GATTGTGCAACATATCCACACAAAACTTGGGCAACATGATCTCTGCAAAATCTACCCAAA 842
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 875 GATTACGCAACATATCCACACAAAACTTGGGCAGCATGATCTCTGCAAAATCTACCCAAA 934
Query 843 CGTTTTTGTTATTGAATCAACATTTCAGATTAGAGGCATGCATACACTTATTCGAGAGAA 902
|||| |||||| | |||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 935 TGTTTATGTTATCCAGTCAACATTTCAGATAAGAGGCATGCATACACTTATTCGGGAAAA 994
Query 903 GGACATATCAAAACATGACTTTGTGTTTTACTCAGATCGCCTCATTCGTTTGGTTGTAGA 962
|||||||||||| ||||||||||||||||| |||||| | ||||||||| |||| || ||
Sbjct 995 GGACATATCAAAGCATGACTTTGTGTTTTATTCAGATAGACTCATTCGTCTGGTCGTGGA 1054
Query 963 GCACGGTCTTGGCCATTTGCCTTTCACTGAGAAACAAGTAGTTACCCCAACAGGATCTGT 1022
||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 1055 GCATGGTCTTGGTCATTTGCCATTCACTGAGAAACAAGTAGTTACTCCAACAGGAGCTGT 1114
Query 1023 GTATAGCGGTGTTGATTTCTGCAAGAAACTTTGTGGCGTCTCAGTCATTCGAAGTGGTGA 1082
|||| |||||||||||||||||||||||||||||| |||||| | ||| ||||||||||
Sbjct 1115 ATATACCGGTGTTGATTTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAGTGGTGA 1174
Query 1083 AAGCATGGAAAACGCATTACGCGCGTGTTGCAAAGGGAT-AAAGATAGGGAAGATTCTCA 1141
|||||||||||| ||||||||||| || |||||||| || ||| ||||||||||||||||
Sbjct 1175 AAGCATGGAAAATGCATTACGCGCTTGCTGCAAAGGAATTAAA-ATAGGGAAGATTCTCA 1233
Query 1142 TCCATCGTGATGGCGACAATGGAATGCAGCTTATATACGAGAAGCTTCCA-A-GTGATAT 1199
|||| ||||||||||| ||||||| |||||||| || ||||||||||| | | ||||
Sbjct 1234 TCCACCGTGATGGCGATAATGGAAAACAGCTTATTTATGAGAAGCTTCCTCACGACATAT 1293
Query 1200 CTCCGAGCGCCATGTCCTGCTAT-TAGATCCTGTTTTAGGCACAGGTAACTCTGCAAACC 1258
|| || |||||||||||||| | |||||||||| |||| |||||||||||| || || |
Sbjct 1294 CT--GAACGCCATGTCCTGCT-TCTAGATCCTGTCTTAGCCACAGGTAACTCGGCTAATC 1350
Query 1259 AGGCGATAGAACTACTCATACAGAAAGGAGTACCTGAAGCCCACATTATATTCTTAAATC 1318
| || || |||||||||||||||||||| || |||||||| |||||||||||| | || |
Sbjct 1351 AAGCCATTGAACTACTCATACAGAAAGGTGTTCCTGAAGCTCACATTATATTCCTCAACC 1410
Query 1319 TCATCTCAGCGCCCGAAGGAATCCATTGCGTCTGCAAACGGTTTCCAA-AGTTGAAGATT 1377
| || || ||||| || |||||||| || ||||||||||| |||||| | ||||| |||
Sbjct 1411 TTATATCGGCGCCGGAGGGAATCCACTGTGTCTGCAAACGTTTTCCAGCA-TTGAAAATT 1469
Query 1378 GTGACTTCAGAAATCGATCAGTGTCTGAACGAAGAGTTTC-GAGTTATACCAGGCTTGGG 1436
||||| || ||||| || || ||||||||| |||| || | |||||||||| ||||| ||
Sbjct 1470 GTGACGTCTGAAATAGACCAATGTCTGAACCAAGAATT-CAGAGTTATACCGGGCTTAGG 1528
Query 1437 TGAGTTTGGTGATCGCTACTTTGGTACTGACGAG 1470
|||||||| ||||| ||||| || || ||||||
Sbjct 1529 CGAGTTTGGCGATCGTTACTTCGGCACCGACGAG 1562
> AT5G34560.1 | Symbols: | pseudogene, uridine kinase/uracil phosphoribosyl
transferas -related, similar to uridine kinase/uracil
phosphoribosyl transferas, putative; blastp match of
57% identity and 2.2e-07 P-value to GP|5107696|pdb|1UPU|D Chain
D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
>GP|5107697|pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase,
Mut-TRUNCATED- | chr5:12916588-12917571
REVERSE LENGTH=984
Length=984
Score = 73.1 bits (39), Expect = 7e-12
Identities = 54/61 (89%), Gaps = 1/61 (2%)
Strand=Plus/Plus
Query 1019 CTGTGTATAGCGGTGTTGATTTCTGCAAGAAACTTTGTGGCGTCTCAGTCATTCGAA-GT 1077
|||| |||| |||||||||||||||||||||||||||||| |||||| | ||| ||| ||
Sbjct 104 CTGTCTATACCGGTGTTGATTTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAAGT 163
Query 1078 G 1078
|
Sbjct 164 G 164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73644199515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5