BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936451
Length=1315
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27220.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2043 0.0
> AT3G27220.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:10051612-10053678 REVERSE LENGTH=1495
Length=1495
Score = 2043 bits (1106), Expect = 0.0
Identities = 1234/1296 (95%), Gaps = 8/1296 (1%)
Strand=Plus/Plus
Query 7 CTGCTTAAACACAAATGGCGAATAAACCTG---ATCATCATCA-C--CACCAATCTTCAA 60
|||| ||||||||||||||||||||||||| |||||||||| | |||||||||||||
Sbjct 71 CTGCATAAACACAAATGGCGAATAAACCTGATCATCATCATCATCATCACCAATCTTCAA 130
Query 61 GGAGATTGATGCTTGTATTGTACTTCACCAGCGTTCTTGGGATTGGATTCGTTGCGGCTT 120
|||||||||||||||| |||||||||||||| |||||||||||||||||| | || ||||
Sbjct 131 GGAGATTGATGCTTGTGTTGTACTTCACCAGTGTTCTTGGGATTGGATTCATCGCAGCTT 190
Query 121 TTCTTTGTCTGTCTTCTTCAATTCTCTCATTCTCCACCCTTTCTTCAATCTCGGTTCCCG 180
|||||||||| ||||||||||||| |||| | ||| | ||| |||||||| ||||||||
Sbjct 191 TTCTTTGTCTCTCTTCTTCAATTCCCTCAGTATCCGCTGTTTTTTCAATCTGGGTTCCCG 250
Query 181 TAAACCGGCCGGAGATTCAGATTCCGAACATCGATTCCAAAATTGTTCAAAAGAGAAGCA 240
| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 251 TTAACCGGCCGGAGATACAGATTCCGATCATCGATTCCAAAATTGTTCAAAAGAGAAGCA 310
Query 241 AACAATCGAATGATACAAAAGATCATCTCCGATTTTTATCGGCAACATTTGCCGATATAC 300
|||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||
Sbjct 311 AACAATCGAATGATACAAAAGATCATGTCCGATTCTTATCGGCAATATTTGCCGATATAC 370
Query 301 CGGCGCCGGAATTACAATGGGAGCAAATGCAATCAGCTCCAGTTCCTCGTCTTGACGGAT 360
|||||||||| ||| |||||||| ||||| ||||||||||||||||||||||||| ||||
Sbjct 371 CGGCGCCGGAGTTAAAATGGGAGGAAATGGAATCAGCTCCAGTTCCTCGTCTTGATGGAT 430
Query 361 ACTCAGTTCAAATCAATAACCTTTTGTATGTCTTCTCCGGTTACGGCAGTCTCGACTATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 ACTCAGTTCAAATCAATAACCTTTTGTATGTCTTCTCCGGTTACGGCAGTCTCGACTATG 490
Query 421 TTCATTCTCATGTGGATGTGTTCAATTTCACAGACAATAAGTGGTGTGAGAGATTCAACA 480
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 491 TTCATTCTCATGTGGATGTGTTCAATTTCACAGACAATAAGTGGTGTGACAGATTCCACA 550
Query 481 CTCCTAAAGAGATGGCGAATTCGCACCTTGGGATTGTGACAGATGGACGGTATGTGTATG 540
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 551 CTCCTAAAGAAATGGCGAATTCGCACCTCGGGATTGTGACGGATGGACGGTATGTATATG 610
Query 541 TGGTTTCAGGGCAGCTTGGTCCACAATGTAGAGGACCCACATCTCGTTCCTTTGTATTAG 600
||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 611 TGGTTTCAGGGCAGCTTGGTCCACAATGTAGAGGACCTACTTCTCGTTCCTTTGTTTTAG 670
Query 601 ATTCAATCACAAAGACTTGGCTCGAGTTTCCTTCACTACCAGCTCCAAGGTATGCTCCTG 660
| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 671 ACTCATTCACAAAGACTTGGCTCGAATTTCCTTCACTACCAGCTCCAAGGTATGCTCCTG 730
Query 661 CGACTCAGATATGGAGAGGGAGGCTTCATGTGATGGGTGGAAGCAAAGAAAATCGCAATG 720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 731 CGACTCAGATATGGAGAGGGAGGCTTCATGTGATGGGTGGAAGCAAAGAGAATCGCAATG 790
Query 721 CGGTTGCTTTTGACCATTGGAGCATAGCTGTAAAAGATGGCAAAGCACTTGACGAATGGC 780
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 791 CCGTTGCTTTTGACCATTGGAGCATAGCTGTAAAAGATGGCAAAGCACTCGACGAATGGC 850
Query 781 GGGAAGAGGTCCCTATTCCTCGAGGTGGACCACACAGGGCTTGTGTAGTTGCTAATGATA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 851 GGGAAGAGGTCCCTATTCCTCGAGGTGGACCACACAGGGCTTGTGTAGTTGCTAACGATA 910
Query 841 AACTACTTGTGATCGGTGGCCAAGAAGGTGACTTCATGGCCAAACCTAACTCACCCATCT 900
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 AACTACTTGTAATCGGTGGCCAAGAAGGTGACTTCATGGCCAAACCTAACTCACCCATCT 970
Query 901 TCAAGTGCTCACGTAGACGCGAGATCTTTAATGGTGAGGTGTATATGATGGACGAGGAGA 960
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 971 TCAAGTGCTCACGTAGACGCGAGATCTTTAATGGTGAGGTGTACATGATGGACGAGGAGA 1030
Query 961 TGAAGTGGAAAGTGTTGCCACCAATGCCAAAGAACAATTCCCACATTGAATCTGCATGGA 1020
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1031 TGAAGTGGAAAATGTTGCCACCAATGCCAAAAAACAATTCCCACATTGAATCTGCGTGGA 1090
Query 1021 TCATTGTCAATAACTCAATTGTTATCGTTGGTGGTACCACGGATTGGCATCCAGTGACGA 1080
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1091 TCATTGTCAATAACTCAATTGTTATCGTTGGTGGTACCACAGATTGGCATCCAGTGACGA 1150
Query 1081 AAAGGCTTGTTCTTGTTGGAGAGATTTTCCGGTTTCAGTTAGATACTTTGACTTGGTCTG 1140
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1151 AAAGGCTTGTTCTTGTTGGAGAGATATTCCGGTTTCAGTTAGATACGTTGACTTGGTCTG 1210
Query 1141 TGATTGGACGGTTACCATACCGTGTCAAAACAGCGATGGCCGGATTCTGGAACGGTTATT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 TGATTGGACGGTTACCATACCGTGTCAAAACAGCGATGGCCGGATTCTGGAACGGTTATT 1270
Query 1201 TGTACTTCACATCAGGG-CAGCGGGATAGAGGACCGGATAATCCACAGCCCGGGAAAGTT 1259
|||||||||| || ||| ||| ||||||||||||| |||||||||||||| |||||||||
Sbjct 1271 TGTACTTCACGTC-GGGACAGAGGGATAGAGGACCAGATAATCCACAGCCTGGGAAAGTT 1329
Query 1260 ATTGGAGAAATGTGGAGAACCAAGTTGAAGTTTTGA 1295
||||||||||||||||||||||||||||||||||||
Sbjct 1330 ATTGGAGAAATGTGGAGAACCAAGTTGAAGTTTTGA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64708502505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5