BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936454

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G27430.2 | Symbols: PBB1 | N-terminal nucleophile aminohydro...   110    2e-23


> AT3G27430.2 | Symbols: PBB1 | N-terminal nucleophile aminohydrolases 
(Ntn hydrolases) superfamily protein | chr3:10152517-10155342 
FORWARD LENGTH=1230
Length=1230

 Score =  110 bits (59),  Expect = 2e-23
 Identities = 71/77 (92%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  101  AAGATTCACTATATGGCACCAAACATATATTGCTGTGGTGCAGGAACCACTGCTGACACT  160
            |||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||
Sbjct  332  AAGATTCACTATATGGCACCAAACATATATTGCTGTGGTGCAGGAACTGCGGCTGATACT  391

Query  161  GAAGCAGTAACTGGTAT  177
            |||||||| |||| |||
Sbjct  392  GAAGCAGTCACTGATAT  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28181356467


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5