BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936456
Length=304
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11650.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 361 3e-99
> AT5G11650.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:3744980-3747125 FORWARD LENGTH=1571
Length=1571
Score = 361 bits (195), Expect = 3e-99
Identities = 207/213 (97%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 19 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTATGGCCGTCGTGGTAACG 78
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 367 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTACGGACGTCGTGGTAACG 426
Query 79 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGGGGATTTTGATTATTA 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGGGGATTTTGATTATTA 486
Query 139 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTAAGCAGTTAAACTCGA 198
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 487 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTAAGCAGCTAAACGCGA 546
Query 199 GTAATTTGGGTGTATACACAATGGACTGGATTG 231
||||||| ||||||||| |||||||||||||||
Sbjct 547 GTAATTTAGGTGTATACGCAATGGACTGGATTG 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14074969720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5