BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936457
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27230.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1988 0.0
> AT3G27230.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:10053929-10055695
FORWARD LENGTH=1618
Length=1618
Score = 1988 bits (1076), Expect = 0.0
Identities = 1209/1274 (95%), Gaps = 5/1274 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTCACTGCATTGAAGATGGGATCTGTATCTTTAAAGATCGGCGATGGAACAGCCA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TCTCTTTCACTGCATTGAAGATGGGATCTGTATCTTTAAAGATCGGCGATGGAACAGCCA 186
Query 61 GATTCCGACGAACATCAATTTGTTCCTCCGCCGTGAACCTCCTCATGCTCTTCTCCGTCG 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 187 GATTCCGACGAACATCAATTTGTTCATCCGCCGTGAACCTCCTCATGCTCTTCTCCGTCG 246
Query 121 TCACCACAAATCTCTTCGCCTTATACGCGTTCTCTTCTCATTCCCAAGCTAATTCGCCAC 180
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 247 TCACCACAAATCTCTTCGCCTTATACGCGTTCTCCTCTCATTCCCAAGCAAACTCGCCAC 306
Query 181 TTCTTCACAATTCCAACAATATCTCACTCGTTTCTCAACATCTCTCTTTGATTCTCCGAG 240
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TTCTCCACAGCTCCAACAATATCTCACTCGTTTCTCAACATCTCTCTTTGATTCTCCGAG 366
Query 241 AGATCGATTCGTCTCAACGTAAGCTTGCTCAGATGGAGAAACAGATGCTTGGTTACGAAT 300
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AAATCGATTCGTCTCAACGCAAGCTTGCTCAGATGGAGAAACAGATGCTTGGTTACGAAT 426
Query 301 CTATTGATCTCTCTCGACCTAATATTGTTCCTGAGCTCAAATTGTTCCTCCAACGTCATC 360
|||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 427 CTATTGATATCTCTCGACCTAACATTGTTCCTGAGCTCAAATTGTTCCTCCAGCGTCATC 486
Query 361 AGCTTCCGTTGGGGAAAGACTCGCGTACCGGGATCACTGAAATGGTGTCGTCTGTTGGAC 420
||||||| || |||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 487 AGCTTCCTTTAGGGAAAGATTCGCGTACCGGGATCACTGAAATGGTGTCTTCCGTTGGAC 546
Query 421 ATTCTTGCGAAAAATCTGCGGATTTGCTTTCGCAGTATATGTCATATAAGGTGTTTGATA 480
||||||| | |||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 547 ATTCTTGTGGGAAATCTACGGATTTGCTTTCTCAGTATATGTCATATAAGGTGTTTGATA 606
Query 481 GATGTCCTGATGATTGGAGTCTTGGCCAGAAGTTGATTCTTCGTGCTTGTGAGCCGTTGC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GATGTCCTGATGATTGGAGTCTTGGCCAGAAGTTGATTCTTCGTGCTTGTGAGCCGTTGC 666
Query 541 CGCGGAGGCGGTGTTTGGCGAAAACGGTGCAGAAGCAAGATCTGAGTC-GATGGCCTGAT 599
||||||| ||||||||||||||||||||||||||||||||| ||||| | | ||||||
Sbjct 667 CGCGGAGACGGTGTTTGGCGAAAACGGTGCAGAAGCAAGATTTGAGTAAG-TCTCCTGAT 725
Query 600 TCGTTGTGGAGATCTGTTAGTAACAAGAGTGTTAATTGGAGTGGACTTGGTTGCAAGAGT 659
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TCGTTATGGAGATCTGTTAGTAACAAGAGTGTTAATTGGAGTGGACTTGGTTGCAAGAGT 785
Query 660 TTTGATTGCTTGAAAGGTAAGAAACTTAGCCGGGAATGCGTTGGTTGTTTCGATTTAGGT 719
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 786 TTTGATTGCTTGAAAGGTAAGAAACTTAGCAAGGAATGTGTTGGTTGTTTCGATTTAGGG 845
Query 720 AATGAGAAAGATAGATTTGTGAAGGTTAAGGGGAAGAATGATTTCTTGATTGATGATGTG 779
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GTTGAGAAAGATAGGTTTGTGAAGGTTAAGGGGAAGAATGATTTCTTGATTGATGATGTG 905
Query 780 TTGGGTTTAGGAAGTGGGAAAATCCGAATCGGGTTTGATGTTAGTGGTGGATCAGGGACT 839
||||||||||||||||||||||| ||||||||||| ||| |||| |||||||||||||||
Sbjct 906 TTGGGTTTAGGAAGTGGGAAAATTCGAATCGGGTTCGATATTAGCGGTGGATCAGGGACT 965
Query 840 TTCGCAGCGAGAATGGCTGAGAAGAACGTGACTATAATCACTAACACGTTGAATAATGGT 899
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 966 TTCGCAGCGAGAATGGCTGAGAAGAACGTGACTGTAATCACTAACACTTTGAATAATGGT 1025
Query 900 GCTCCGTTTAGTGAGTTTATAGCCGCGAGGGGGCTTTTTCCGTTGTTCTTGAGTTTAGAC 959
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 1026 GCTCCGTTTAGTGAGTTTATAGCTGCGAGAGGGCTCTTTCCGTTGTTCTTGAGCTTAGAC 1085
Query 960 CATAGATTTCCTTTCCTTGACAATGTGTTTGATCTCATCCATGCTTCAAGCGGATTAGAT 1019
|||||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1086 CATAGATTTCCTTTTCTTGACAATGTGTTTGATCTTATTCATGCTTCTAGCGGATTAGAT 1145
Query 1020 GTTGAGGGTAAAGCGGAGAAGTTAGAGTT-TGTGATGTTCGATCTTGATCGGGTTTTGAA 1078
||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||
Sbjct 1146 GTTGAGGGTAAAGCGGAGAAGCTAGAGTTCT-TGATGTTCGATCTTGATCGGGTTTTGAA 1204
Query 1079 ACCCGGTGGATTGTTCTGGTTGGATAACTTCTACTGCGCTAACGATGAAAAGAAGAAAGA 1138
|||| |||||||||||||||||||||||||||| || ||||| ||||| |||||||||||
Sbjct 1205 ACCCCGTGGATTGTTCTGGTTGGATAACTTCTATTGTGCTAATGATGAGAAGAAGAAAGA 1264
Query 1139 TCTTACACGTTTGATTGAGAGGTTTGGGTATAAGAAGCTTAAATGGGTCATTGGAGAGAA 1198
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1265 ACTTACACGTATGATTGAGAGGTTTGGGTATAAGAAGCTTAAATGGGTTATTGGAGAGAA 1324
Query 1199 GGCTGATGCACAAGTTTATCTCTCAGCTGTTCTGCAAAAGCCAGTGAGAGCTTGATCGG- 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GGCTGATGCACAAGTTTATCTCTCAGCTGTTCTGCAAAAGCCAGTGAGAGCTTGATCGGG 1384
Query 1258 AAGGCAAAAGGAAG 1271
|| |||||||||||
Sbjct 1385 AATGCAAAAGGAAG 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62600079615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5