BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936462
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27270.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensi... 1210 0.0
> AT3G27270.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
domain containing protein | chr3:10073280-10074160 FORWARD
LENGTH=881
Length=881
Score = 1210 bits (655), Expect = 0.0
Identities = 749/794 (94%), Gaps = 8/794 (1%)
Strand=Plus/Plus
Query 1 CAAGTTATTATTTATCAGTAATGGAACCAATTACTTATTCCAAAGATCTTCCATTATTCT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 CAAGTTATTCTTTATCAGTAATGGAACCAATTACTTATTCCAAAGATCTTCCATTATTCT 75
Query 61 TCTCTATCTTCATCTTCGCTTATCTTCTCGGTTACTTATTCATTTTCAATAAATGGACTC 120
|||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 76 TCTCAATCTTCATCTTCGTTTATCTTCTCGGTTACTTATTCATTTTCAAAAAATGGACTC 135
Query 121 CAGG-GACTCGTCCTTTAGCTTCCAGCTGTTTAATATCCCTCCTCCACGGCGTCTCCGCC 179
| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 136 C-GGAGACTCGTCCTTTAGCTTCCAGCTGTTTAATCTCCCTCCTCCACGGCGTCTCCGCC 194
Query 180 GTCGTACTCGCCACCAACGCCTTACTCTCCGACCCTAACCGTGGATTCTCCTCCGTCAAC 239
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 195 GTCGTCCTCGCCACGAACGCCTTACTCTCCGATCCTAACCGTGGATTCTCCTCCGTCAAC 254
Query 240 ACCCAATCTCAAAACTCTGTTCTCGATTTCAGCTCCGCTTATTTCCTCGCTGATCTCGTC 299
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 255 ACCCAATCTCAAAACTCAATTCTCGATTTCAGCTCCGCTTATTTCCTCGCTGATCTCGTC 314
Query 300 CACCTCGCCGTGTTTCCTTCTCCCGCCGGCGGAGACTCACTTTTCGCAGCTCATCACGC- 358
||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| |
Sbjct 315 CACCTTGCCGTGTTTCCTTCTCCCGCCGGCGGAGACTCGCTTTTCGCCGCTCATCAC-CT 373
Query 359 CGCCGTGCTCTTCGTTTTCCTCACGTGCCGTTACATGGTTGCTCACGGCGCTTGCGCTCT 418
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 374 CGCCGTGCTTTTCGTTTTCCTCACCTGCCGTTACATGGTTGCTCACGGCGCCTGCGCTCT 433
Query 419 GCTGGCGCTGCTCGTCGTCGCCGAAGCGACCAGCGCGTGTCAGAACACGTGGACGCTAGC 478
||| |||||||| |||||||| || || || |||||||||||||||||||||||||| ||
Sbjct 434 GCTCGCGCTGCTAGTCGTCGCGGAGGCCACGAGCGCGTGTCAGAACACGTGGACGCTCGC 493
Query 479 GGATGCGCGTGGTAAAGACGCGCCTCTCGCGGTGAGTTTGCACCGGTTCGTTACGGTGCC 538
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 494 GGATGCGCGTGGGAAAGACGCGCCTCTAGCGGTGAGTTTGCACCGGTTCGTTACGGTGCC 553
Query 539 GTTTTACGCGTCGTATAGCGTTTGCAGGTGCGTTATAGCGCCGTTGCTTATCGTTAAGAT 598
|||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 554 GTTTTACGCGTCCTATAGCGTCTGCAGGTGCGTTCTAGCGCCGTTGCTTATCGTTAAGAT 613
Query 599 GACGTGGTTTTACGTCAGTGGAGGCGCTGATGACGTCATACCCAGATGGGTTTGGGTTTC 658
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GACGTGGTTTTACGTCAGCGGAGGCGCTGATGACGTCATACCCAGATGGGTTTGGGTTTC 673
Query 659 GTGGACCGTTGTTATTGTTGCTGCCGTTACCGTTAGTATCCTTTGGATTTGGAATTTATG 718
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 674 GTGGACCGTTGTTATTGTTACTGCCGTTACCGTTAGTATCCTTTGGATTTGGAATTTGTG 733
Query 719 GGTTCTGTTTTTTCAGGAAAGGTATTCCAAATTTACCAAAAAAGTTAAATAGAAAA-ATA 777
||| ||||||||||||||||| |||||||||||||||||||| |||| || |||| |||
Sbjct 734 GGTACTGTTTTTTCAGGAAAGATATTCCAAATTTACCAAAAAGGTTAGGTA-AAAATATA 792
Query 778 TTTGA-ATTTTCCA 790
||| | | ||||||
Sbjct 793 TTT-ACAGTTTCCA 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38429122455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5