BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936463

Length=629
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56520.1 | Symbols:  | NAC (No Apical Meristem) domain trans...   291    7e-78


> AT3G56520.1 | Symbols:  | NAC (No Apical Meristem) domain transcriptional 
regulator superfamily protein | chr3:20947107-20947731 
REVERSE LENGTH=528
Length=528

 Score =  291 bits (157),  Expect = 7e-78
 Identities = 250/293 (85%), Gaps = 13/293 (4%)
 Strand=Plus/Plus

Query  23   ATGGAGCCAATATACAGACCTTTGCCTATAGGATTCAAGTTTCGTCCAACAAGGTTTGAG  82
            |||||||||| | ||||| |||||||  ||||||||| ||||||| | ||||  | ||||
Sbjct  1    ATGGAGCCAACACACAGAGCTTTGCCCGTAGGATTCAGGTTTCGTTCTACAAACTGTGAG  60

Query  83   ATGGCAAA-TAATTTTTTGAAGAAAAAAGCTTTAGGACAGGCAAT-AATAGCTCGTAGGG  140
            ||  |||| | ||||||||||||||||||||||||||||  | || || |||||||| | 
Sbjct  61   ATTTCAAACT-ATTTTTTGAAGAAAAAAGCTTTAGGACAACCCATGAA-AGCTCGTACGA  118

Query  141  TACCTGAAGAGTGTCATGATATCTTCTCAAGACATCCTCGTGATTTGCCTGGTTATCCAA  200
            ||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||
Sbjct  119  TACCTGAAGAGTGTCATGATATCTTCTCAAGACATCCGCATGATCTGCCTGGTTATCCAA  178

Query  201  GAGAAGAGCATTGGTATTATTTTTGCAGGAAACGTAACAACCAAGTTACTTGTAAC-CT-  258
            | ||||| |||||||| ||||||||||| |||||| |||||||||||||| ||||| || 
Sbjct  179  GTGAAGAACATTGGTACTATTTTTGCAGAAAACGTGACAACCAAGTTACTAGTAACTCTC  238

Query  259  AT-------GGACACCAATAGGAGAAGAAACCAATGTGTTATATCCAAAGAAT  304
            ||       |||||||||| |||||||||||||||||| || |||||||||||
Sbjct  239  ATAATCTCTGGACACCAATCGGAGAAGAAACCAATGTGCTAGATCCAAAGAAT  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30341424788


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5