BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936468

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22290.1 | Symbols: anac089, NAC089 | NAC domain containing ...   215    1e-55
  AT1G18070.3 | Symbols:  | Translation elongation factor EF1A/in...  93.5    7e-19


> AT5G22290.1 | Symbols: anac089, NAC089 | NAC domain containing 
protein 89 | chr5:7375923-7377644 REVERSE LENGTH=1290
Length=1290

 Score =  215 bits (116),  Expect = 1e-55
 Identities = 134/143 (94%), Gaps = 0/143 (0%)
 Strand=Plus/Plus

Query  77    AAGCGGTAATGATGGGGAACACATCAAACGAAATCCCAACACTAGAATCAGCATCAATGG  136
             ||||||| ||||  ||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct  895   AAGCGGTGATGACAGGGAACACACCAAACGAAGTGCCAACACTAGAATCAGCATCAATGG  954

Query  137   AGATAAGGGTACTTCCCTTACCAAACATGATAGACAAACAAATGTCATCACTGTTAGAGG  196
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  955   AGATAAGGGTACTTCCTTTACCAAACATGATAGACAAACAAATGTCATCACTGTTAGAGG  1014

Query  197   AATGACCATCACAAAAGAAGAAA  219
             || |||||||||| |||||||||
Sbjct  1015  AAAGACCATCACAGAAGAAGAAA  1037


> AT1G18070.3 | Symbols:  | Translation elongation factor EF1A/initiation 
factor IF2gamma family protein | chr1:6213777-6218340 
REVERSE LENGTH=2120
Length=2120

 Score = 93.5 bits (50),  Expect = 7e-19
 Identities = 54/56 (96%), Gaps = 0/56 (0%)
 Strand=Plus/Plus

Query  25   GCTTCTGAGAATCATGATGAAGTAATGCTTCATCCAGTCCATAACCCAGCGAAAGC  80
            ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  301  GCTTCTGAGGATCATGATGAAGTAATGCTTCATCCAGTCCATAATCCAGCGAAAGC  356



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9902746553


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5