BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936476
Length=381
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27331.1 | Symbols: | Plant self-incompatibility protein S1... 150 8e-36
AT3G27329.1 | Symbols: | Plant self-incompatibility protein S1... 147 1e-34
AT3G26860.2 | Symbols: | Plant self-incompatibility protein S1... 97.1 1e-19
> AT3G27331.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:10115541-10116278 FORWARD LENGTH=387
Length=387
Score = 150 bits (81), Expect = 8e-36
Identities = 113/129 (88%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 59 TTTGCATACTTGGTCATGTATCTGGTGCCGGAATCAGGATCTCTAACGAACTCAAATTCA 118
||||||| || | |||||||| || | ||||||||||||||| |||||||||||| ||
Sbjct 14 TTTGCATGCTAGACCATGTATCAGGCGGCGGAATCAGGATCTCGAACGAACTCAAAAACA 73
Query 119 AGAAACTTCTCTGGATTAGATGTTATTCCAAAGATGACGTATTAGGTCCAAAAACAATAC 178
|||||||||| ||||| | |||||||||||||||||||||||||||||||| | |||||
Sbjct 74 AGAAACTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATAATAC 133
Query 179 CAATCGGAC 187
|||||||||
Sbjct 134 CAATCGGAC 142
Score = 134 bits (72), Expect = 8e-31
Identities = 144/178 (81%), Gaps = 8/178 (4%)
Strand=Plus/Plus
Query 187 CCTAACTATAGACATTATCAGAACTTTACAGCATTCAAGCTTTTTGGTGTTA-AGGATCA 245
||||||| |||||| ||||||||||||||||||||||||||||| | | | || || |
Sbjct 214 CCTAACTTTAGACACTATCAGAACTTTACAGCATTCAAGCTTTTCGCTATGGCAG-ATGA 272
Query 246 AGGAGGCCTATGGGATTGGAGAGCAAGAGAAGATGGAATTTATTTGAAGAAAGAGGGTGG 305
|||||| |||||||||||||||||||||||| |||| || ||||| |||||||| | |||
Sbjct 273 AGGAGGTCTATGGGATTGGAGAGCAAGAGAAAATGGGATCTATTTAAAGAAAGAAGCTGG 332
Query 306 T-AGCCA-TATTAAGAATCCGGTT-GATATGCATAAAGAGTATGTTTGGATAAATTAA 360
|| | | |||| | || || | |||||||||||||||| |||||| |||||
Sbjct 333 CGAGAAAGTTTTAA-AC-CCAATTTGG-ATGCATAAAGAGTATGCTTGGATTTATTAA 387
> AT3G27329.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:10114192-10114560 FORWARD LENGTH=369
Length=369
Score = 147 bits (79), Expect = 1e-34
Identities = 103/115 (90%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 73 CATGTATCTGGTGCCGGAATCAGGATCTCTAACGAACTCAAATTCAAGAAACTTCTCTGG 132
|||||||| || | ||||||||||||||| |||||||||||| |||||||||||| |||
Sbjct 10 CATGTATCAGGCGGCGGAATCAGGATCTCGAACGAACTCAAAAACAAGAAACTTCTTTGG 69
Query 133 ATTAGATGTTATTCCAAAGATGACGTATTAGGTCCAAAAACAATACCAATCGGAC 187
|| | |||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 70 ATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATAATACCAATCGGAC 124
Score = 134 bits (72), Expect = 8e-31
Identities = 144/178 (81%), Gaps = 8/178 (4%)
Strand=Plus/Plus
Query 187 CCTAACTATAGACATTATCAGAACTTTACAGCATTCAAGCTTTTTGGTGTTA-AGGATCA 245
||||||| |||||| ||||||||||||||||||||||||||||| | | | || || |
Sbjct 196 CCTAACTTTAGACACTATCAGAACTTTACAGCATTCAAGCTTTTCGCTATGGCAG-ATGA 254
Query 246 AGGAGGCCTATGGGATTGGAGAGCAAGAGAAGATGGAATTTATTTGAAGAAAGAGGGTGG 305
|||||| |||||||||||||||||||||||| |||| || ||||| || ||||| | |||
Sbjct 255 AGGAGGTCTATGGGATTGGAGAGCAAGAGAAAATGGGATCTATTTAAAAAAAGAAGCTGG 314
Query 306 T-AGCCA-TATTAAGAATCCGGTT-GATATGCATAAAGAGTATGTTTGGATAAATTAA 360
|| | | |||| | || ||| | |||||||||||||||| |||||| |||||
Sbjct 315 CGAGAAAGTTTTAA-AC-CCAGTTTGG-ATGCATAAAGAGTATGATTGGATTTATTAA 369
> AT3G26860.2 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:9901516-9901884 REVERSE LENGTH=369
Length=369
Score = 97.1 bits (52), Expect = 1e-19
Identities = 91/110 (83%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 187 CCTAACTATAGACATTATCAGAACTTTACAGCATTCAAGCTTTTTGGTG-TTAAGGATCA 245
||||| |||||||| |||| |||||||||||||| || |||| ||| || | ||| |
Sbjct 235 CCTAATTATAGACACCATCAAAACTTTACAGCATTTAAACTTTACAGTGCTTCA-GATGA 293
Query 246 AGGAGGCCTATGGGATTGGAGAGCAAGAGAAGATGGAATTTATTTGAAGA 295
|||||| |||||||||||||||||||||||||||| || ||| | ||||
Sbjct 294 TGGAGGCGTATGGGATTGGAGAGCAAGAGAAGATGGGATCTATCTAAAGA 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17945586393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5