BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936480
Length=409
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27331.1 | Symbols: | Plant self-incompatibility protein S1... 505 2e-142
AT3G27329.1 | Symbols: | Plant self-incompatibility protein S1... 488 2e-137
AT4G08560.1 | Symbols: APUM15, PUM15 | pumilio 15 | chr4:545043... 237 6e-62
> AT3G27331.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:10115541-10116278 FORWARD LENGTH=387
Length=387
Score = 505 bits (273), Expect = 2e-142
Identities = 346/381 (91%), Gaps = 6/381 (2%)
Strand=Plus/Plus
Query 12 AGCATTTGCATGCTAGACCATGTATCCGGCGGTGGATTCAGGATCTCGAACGAACTCAAA 71
|||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||
Sbjct 10 AGCATTTGCATGCTAGACCATGTATCAGGCGGCGGAATCAGGATCTCGAACGAACTCAAA 69
Query 72 TTCAAGAAACGTCTCTGGATGAGGTGTTATTCCAAAGATGACGTATTAGGTCCAGACATA 131
|||||||| ||| |||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 70 AACAAGAAACTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATA 129
Query 132 ATACCAATCGGACAACATTATGAAAATCTTTTCGATATTAACTTTTGGCATACAACGCGT 191
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 130 ATACCAATCGGACAACATTATGAAAATCTTTTTGATATTAACTTTTGGCATACAACGCGT 189
Query 192 TTTATGTGTACTTTGAGACAAGGTCCTAA-TTATAAACACTATCAGAACTTTACAGTATT 250
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct 190 TTTATGTGTACTTTGAGACAAGGTCCTAACTT-TAGACACTATCAGAACTTTACAGCATT 248
Query 251 CAAGCTTTTTAG-TATGGCTGATCAAGGAGG-CTTATGGGATTGGAGAGCAAGAGAAAAT 308
||||||||| | |||||| ||| ||||||| || |||||||||||||||||||||||||
Sbjct 249 CAAGCTTTTC-GCTATGGCAGATGAAGGAGGTCT-ATGGGATTGGAGAGCAAGAGAAAAT 306
Query 309 GGTATCTATTTAAAGAAAGTAGCTAGCGAGCAAGTTTTAAACCCGGTTTATATGCATAAA 368
|| |||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||
Sbjct 307 GGGATCTATTTAAAGAAAGAAGCTGGCGAGAAAGTTTTAAACCCAATTTGGATGCATAAA 366
Query 369 GTGTTTGATTGGATAAATTAA 389
| || || |||||| |||||
Sbjct 367 GAGTATGCTTGGATTTATTAA 387
> AT3G27329.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:10114192-10114560 FORWARD LENGTH=369
Length=369
Score = 488 bits (264), Expect = 2e-137
Identities = 337/372 (91%), Gaps = 6/372 (2%)
Strand=Plus/Plus
Query 21 ATGCTAGACCATGTATCCGGCGGTGGATTCAGGATCTCGAACGAACTCAAATTCAAGAAA 80
||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||
Sbjct 1 ATGCTAGACCATGTATCAGGCGGCGGAATCAGGATCTCGAACGAACTCAAAAACAAGAAA 60
Query 81 CGTCTCTGGATGAGGTGTTATTCCAAAGATGACGTATTAGGTCCAGACATAATACCAATC 140
| ||| |||||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 61 CTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATAATACCAATC 120
Query 141 GGACAACATTATGAAAATCTTTTCGATATTAACTTTTGGCATACAACGCGTTTTATGTGT 200
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 121 GGACAACATTATGAAAATCTTTTTGATATTAACTTTTGGCATACAACCCGTTTTATGTGT 180
Query 201 ACTTTGAGACAAGGTCCTAA-TTATAAACACTATCAGAACTTTACAGTATTCAAGCTTTT 259
|||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||
Sbjct 181 ACTTTGAGACAAGGTCCTAACTT-TAGACACTATCAGAACTTTACAGCATTCAAGCTTTT 239
Query 260 TAG-TATGGCTGATCAAGGAGG-CTTATGGGATTGGAGAGCAAGAGAAAATGGTATCTAT 317
| |||||| ||| ||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct 240 C-GCTATGGCAGATGAAGGAGGTCT-ATGGGATTGGAGAGCAAGAGAAAATGGGATCTAT 297
Query 318 TTAAAGAAAGTAGCTAGCGAGCAAGTTTTAAACCCGGTTTATATGCATAAAGTGTTTGAT 377
||||| |||| |||| ||||| ||||||||||||| |||| |||||||||| || ||||
Sbjct 298 TTAAAAAAAGAAGCTGGCGAGAAAGTTTTAAACCCAGTTTGGATGCATAAAGAGTATGAT 357
Query 378 TGGATAAATTAA 389
||||| |||||
Sbjct 358 TGGATTTATTAA 369
> AT4G08560.1 | Symbols: APUM15, PUM15 | pumilio 15 | chr4:5450434-5453183
FORWARD LENGTH=1434
Length=1434
Score = 237 bits (128), Expect = 6e-62
Identities = 217/260 (83%), Gaps = 6/260 (2%)
Strand=Plus/Plus
Query 3 TTTGTTTTTAGCATTTGCATGCTAGACCATGTATCCG-GCGGTGGATTCAGGATCTCGAA 61
||||| |||||| |||||||| | | |||||||| || | | || |||||||| ||||
Sbjct 25 TTTGTGTTTAGCCTTTGCATGTTTGGCCATGTAT-CGAGAGCAAGAATCAGGATCGCGAA 83
Query 62 CGAACTCAAATTCAAGAAACGTCTCTGGATGAGGTGTTATTCCAAAGATGACGTATTAGG 121
||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 84 CGAGCTCAAATTCAAGAAAAACCTCTGGATGAGGTGTTATTCTAAAGATGATGTATTAGG 143
Query 122 TCCAGACATAATACCAATCGGACAACATTAT-GAAAATCTTTTCGATATTAACTTTTGGC 180
|||| | ||||||||||||||| ||||| | | | | |||| | | ||||||||||
Sbjct 144 TCCACATATAATACCAATCGGAGGACATTTTCTAGATTATTTT-GGCACTAACTTTTGGG 202
Query 181 ATACAACGCGTTTTATGTGTACTTTGAGACAAGGTCCTAATTATAAACACTATCAGAA-C 239
||| || |||||||||||||||||||||||||||||||| |||| ||||||||| || |
Sbjct 203 GTACCACCCGTTTTATGTGTACTTTGAGACAAGGTCCTAACTATATACACTATCA-AAGC 261
Query 240 TTTACAGTATTCAAGCTTTT 259
||||| | ||||||||||||
Sbjct 262 TTTACGGCATTCAAGCTTTT 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19353083365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5