BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936481
Length=409
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27331.1 | Symbols: | Plant self-incompatibility protein S1... 577 3e-164
AT3G27329.1 | Symbols: | Plant self-incompatibility protein S1... 560 3e-159
AT4G08560.1 | Symbols: APUM15, PUM15 | pumilio 15 | chr4:545043... 222 2e-57
> AT3G27331.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:10115541-10116278 FORWARD LENGTH=387
Length=387
Score = 577 bits (312), Expect = 3e-164
Identities = 357/379 (94%), Gaps = 2/379 (1%)
Strand=Plus/Plus
Query 12 AGCATTTGCATGCTAGACCATGTATCCGGCGGCGGATTTAGGATCTCGAACGAACTCAAA 71
|||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 10 AGCATTTGCATGCTAGACCATGTATCAGGCGGCGGAATCAGGATCTCGAACGAACTCAAA 69
Query 72 AACAAGAAACGTCTCTGGATGAGGTGTTATTCCAAAGATGACGTATTAGGTCCAAACATA 131
|||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 70 AACAAGAAACTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATA 129
Query 132 ATACCAATCGGACAACATTATGAAAATCTTTTCGATATAAACTTTTGGCATACAACGCGT 191
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 130 ATACCAATCGGACAACATTATGAAAATCTTTTTGATATTAACTTTTGGCATACAACGCGT 189
Query 192 TTTATGTGTACTTTGAGACAAGGTCCTAACTATAGGCACTATCAGAACTTTACAGCATTC 251
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 190 TTTATGTGTACTTTGAGACAAGGTCCTAACTTTAGACACTATCAGAACTTTACAGCATTC 249
Query 252 AAGCTTTTCGCTATGGCAGATCAAGGAGGCCTATGGGATTGGAGAGCAAGAGAAAATGGG 311
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 250 AAGCTTTTCGCTATGGCAGATGAAGGAGGTCTATGGGATTGGAGAGCAAGAGAAAATGGG 309
Query 312 ATCTATTTAAAGAAAGAAGCTGGCGAGTATGTTTATAA-CGCGGTTTGGATGCATAAAGA 370
||||||||||||||||||||||||||| | |||| ||| | | ||||||||||||||||
Sbjct 310 ATCTATTTAAAGAAAGAAGCTGGCGAGAAAGTTT-TAAACCCAATTTGGATGCATAAAGA 368
Query 371 GTATGATTGGATATATTAA 389
||||| |||||| ||||||
Sbjct 369 GTATGCTTGGATTTATTAA 387
> AT3G27329.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:10114192-10114560 FORWARD LENGTH=369
Length=369
Score = 560 bits (303), Expect = 3e-159
Identities = 348/370 (94%), Gaps = 2/370 (1%)
Strand=Plus/Plus
Query 21 ATGCTAGACCATGTATCCGGCGGCGGATTTAGGATCTCGAACGAACTCAAAAACAAGAAA 80
||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1 ATGCTAGACCATGTATCAGGCGGCGGAATCAGGATCTCGAACGAACTCAAAAACAAGAAA 60
Query 81 CGTCTCTGGATGAGGTGTTATTCCAAAGATGACGTATTAGGTCCAAACATAATACCAATC 140
| ||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATAATACCAATC 120
Query 141 GGACAACATTATGAAAATCTTTTCGATATAAACTTTTGGCATACAACGCGTTTTATGTGT 200
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 121 GGACAACATTATGAAAATCTTTTTGATATTAACTTTTGGCATACAACCCGTTTTATGTGT 180
Query 201 ACTTTGAGACAAGGTCCTAACTATAGGCACTATCAGAACTTTACAGCATTCAAGCTTTTC 260
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 181 ACTTTGAGACAAGGTCCTAACTTTAGACACTATCAGAACTTTACAGCATTCAAGCTTTTC 240
Query 261 GCTATGGCAGATCAAGGAGGCCTATGGGATTGGAGAGCAAGAGAAAATGGGATCTATTTA 320
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTATGGCAGATGAAGGAGGTCTATGGGATTGGAGAGCAAGAGAAAATGGGATCTATTTA 300
Query 321 AAGAAAGAAGCTGGCGAGTATGTTTATAA-CGCGGTTTGGATGCATAAAGAGTATGATTG 379
|| ||||||||||||||| | |||| ||| | | ||||||||||||||||||||||||||
Sbjct 301 AAAAAAGAAGCTGGCGAGAAAGTTT-TAAACCCAGTTTGGATGCATAAAGAGTATGATTG 359
Query 380 GATATATTAA 389
||| ||||||
Sbjct 360 GATTTATTAA 369
> AT4G08560.1 | Symbols: APUM15, PUM15 | pumilio 15 | chr4:5450434-5453183
FORWARD LENGTH=1434
Length=1434
Score = 222 bits (120), Expect = 2e-57
Identities = 217/263 (83%), Gaps = 10/263 (4%)
Strand=Plus/Plus
Query 3 TTTGTTTTTAGCATTTGCATGCTAGACCATGTATCCGGCG-GC-GGATTTAGGATCTCGA 60
||||| |||||| |||||||| | | |||||||| | | | || || | |||||| |||
Sbjct 25 TTTGTGTTTAGCCTTTGCATGTTTGGCCATGTAT-C-GAGAGCAAGAATCAGGATCGCGA 82
Query 61 ACGAACTCAAAAACAAGAAACGTCTCTGGATGAGGTGTTATTCCAAAGATGACGTATTAG 120
|||| |||||| ||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 83 ACGAGCTCAAATTCAAGAAAAACCTCTGGATGAGGTGTTATTCTAAAGATGATGTATTAG 142
Query 121 GTCCAAACATAATACCAATCGGACAACATTAT-GAAAATCTTTTCGATA-TAAACTTTTG 178
||||| | ||||||||||||||| ||||| | | | | |||| | | | ||||||||
Sbjct 143 GTCCACATATAATACCAATCGGAGGACATTTTCTAGATTATTTT-GGCACT-AACTTTTG 200
Query 179 GCATACAACGCGTTTTATGTGTACTTTGAGACAAGGTCCTAACTATAGGCACTATCAGAA 238
| ||| || ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 201 GGGTACCACCCGTTTTATGTGTACTTTGAGACAAGGTCCTAACTATATACACTATCA-AA 259
Query 239 -CTTTACAGCATTCAAGCTTTTC 260
|||||| |||||||||||||||
Sbjct 260 GCTTTACGGCATTCAAGCTTTTC 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19353083365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5