BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936483

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G27340.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   697    0.0  


> AT3G27340.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant 
structures; EXPRESSED DURING: 15 growth stages; CONTAINS 
InterPro DOMAIN/s: Gamma-butyrobetaine dioxygenase/Trimethyllysine 
dioxygenase, N-terminal (InterPro:IPR010376); Has 1035 
Blast hits to 1035 proteins in 399 species: Archae - 0; Bacteria 
- 765; Metazoa - 0; Fungi - 0; Plants - 39; Viruses 
- 0; Other Eukaryotes - 231 (source: NCBI BLink). | chr3:10121234-10122951 
FORWARD LENGTH=754
Length=754

 Score =  697 bits (377),  Expect = 0.0
 Identities = 435/463 (94%), Gaps = 4/463 (1%)
 Strand=Plus/Plus

Query  1    CCGGCGATCGTCGGAAAAAGAAATGTGGGCGATTACGAGAGTGATAAGCCGGCGAATCCA  60
            |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct  48   CCGGCGATCGCCGGGAAAAGAAATGTGGGCGATTACGAGAGTGATAAGCCGGCGAGTTCA  107

Query  61   TGGAAAAAGTGATGTTACTGTTTCC-AAACTCTCAGGATTCTCTATTGTATCTCCCAAAC  119
            ||||| ||||  | |||||  |||| ||||||||||| ||||||||||||||||||||||
Sbjct  108  TGGAACAAGTTTTATTACT-ATTCCAAAACTCTCAGGTTTCTCTATTGTATCTCCCAAAC  166

Query  120  ACGTTGAGGTAGAGTATTCAGATGGAACAAAGTTCAATTTTTCATCAGAGTTTTTGAGGA  179
            | ||||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |
Sbjct  167  AAGTTGAGGTAGAGTATGCAGATGGAACCAAGTTCAATTTTTCATCAGAGTTTCTGAGAA  226

Query  180  TTCATAGTCCAGCTGCTGATGGAAAAGTCAGAACAATCGGTGGTGAAAGGGTGATATCTG  239
            |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct  227  TTCATAGTCCAGCTGCTGATGGAAAAGTCAGATCAATCGGTGGTGAAAAGGTGATATCTG  286

Query  240  GAAGGCGGTATGTAGGAATCATGTCTGCAGAACCGGTTGGCAACTATGGGGTAAGGTTAG  299
            |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  287  GAAGGCGGTATGTAGGAATCATGTCTGCAGAACCGGTTGGAAACTACGGGGTAAGGTTAG  346

Query  300  TGTTTGATGACTTGCATAGAACAGGGATATATCCATGGGATTATTTCTATGAGCTTGGGA  359
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  347  TGTTTGATGACTTGCATAGAACAGGGATATATCCATGGGATTATTTCTACGAGCTTGGGA  406

Query  360  GTAATAAGTTTGGTCTGATGAG-AAGCTATATCAAGACTCTTCAAAAACATAATCTCAGC  418
            | |||||||||||||| ||||| || ||||||||||||||||||||| ||||||||||||
Sbjct  407  GCAATAAGTTTGGTCTTATGAGGAA-CTATATCAAGACTCTTCAAAAGCATAATCTCAGC  465

Query  419  CGTGAACCTCCTCCTTCGAGAAAGAGATGATTCTGATGATCAA  461
            ||||||||||||||||| |||||||||||||||||||||||||
Sbjct  466  CGTGAACCTCCTCCTTCAAGAAAGAGATGATTCTGATGATCAA  508



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5