BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936489
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 | c... 1428 0.0
AT5G40650.1 | Symbols: SDH2-2 | succinate dehydrogenase 2-2 | c... 959 0.0
> AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 |
chr3:10129610-10132760 REVERSE LENGTH=2424
Length=2424
Score = 1428 bits (773), Expect = 0.0
Identities = 846/881 (96%), Gaps = 6/881 (1%)
Strand=Plus/Plus
Query 1 GATTTCTCCGAGAGaaaaaaaaTGGCGTCTGGTTTGATCGGAAGATTGGTTGGAACGAAA 60
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 GATTTCTCCGAG-G-AAAAAAATGGCGTCTGGTTTGATCGGAAGATTGGTTGGAACGAAA 126
Query 61 CCGTCGAAATTAGCCACGGCGGTGCGGTTAATTCCGGCGAGATGGACCTCTACGGGAGCG 120
|||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||
Sbjct 127 CCGTCGAAATTAGCCACGGCGGCGAGGTTAATTCCGGCGAGATGGACCTCTACAGGAGCG 186
Query 121 GAGGCGGAAACAAAAGCTTCGTCTGGCGGCGGAAGAGGATCGAACTTGAAGACTTTTCAG 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 187 GAGGCGGAAACAAAAGCTTCCTCTGGCGGCGGAAGAGGATCGAACTTGAAGACTTTTCAG 246
Query 181 ATCTATCGATGGAATCCAGATAATCCAGGGAAGCCAGAGCTT-AAAGATTACCAGGTCGA 239
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct 247 ATCTATCGATGGAATCCAGATAATCCAGGGAAGCCAGAGCTTCAAA-ATTACCAGATCGA 305
Query 240 TCTCAAGGATTGTGGTCCAATGGTTTTAGATGCTTTGATTAAGATCAAAAACGAAATGGA 299
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 306 TCTCAAAGATTGTGGTCCAATGGTATTAGATGCTTTGATTAAGATCAAAAACGAAATGGA 365
Query 300 TCCATCGCTTACCTTCCGTAGATCGTGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAA 359
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 366 TCCATCTCTTACTTTCCGTAGATCATGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAA 425
Query 360 CATTGATGGATGTAATGGACTTGCTTGTTTAACGAAGATTCAAGATGGAGCATCGGGGAC 419
||||||||||||||| |||||||||||||| || ||||||||||||| |||||||| |||
Sbjct 426 CATTGATGGATGTAACGGACTTGCTTGTTTGACAAAGATTCAAGATGAAGCATCGGAGAC 485
Query 420 GACGATTACACCGTTGCCTCATATGTTTGTGATTAAGGATCTT-GTGGTTGATATGACTA 478
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 486 GACGATTACACCGTTGCCTCATATGTTTGTGATTAAGGAT-TTGGTTGTTGATATGACTA 544
Query 479 ATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCATCTG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 545 ATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCGTCTG 604
Query 539 TTCCTGCTAAGGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TTCCTGCTAAGGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATG 664
Query 599 AGTGTATTCTTTGTGCTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGT 658
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 AATGTATTCTTTGTGCTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGT 724
Query 659 CTTACCTTGGTCCAGCTGCTTTGCTACATGCTAATAGGTGGATAAGTGATAGTCGTGATG 718
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 725 CTTACCTTGGTCCAGCTGCTTTGCTACACGCTAATAGGTGGATAAGCGACAGTCGTGATG 784
Query 719 AGTACACTAAGGAAAGACTTGAAGCTGTTGATGACGAGTTCAAGCTTTACCGTTGCCATA 778
|||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 785 AGTACACTAAGGAAAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATA 844
Query 779 CAATCTTGAACTGTGCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATCGCAC 838
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 845 CAATCTTGAATTGTGCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATTACTC 904
Query 839 ACATCAAGCAACTTCAACGTTGAAACAGCTAAGTTTGTGTG 879
|||||||||||||||| ||||||||||||||||||||||||
Sbjct 905 ACATCAAGCAACTTCAGCGTTGAAACAGCTAAGTTTGTGTG 945
> AT5G40650.1 | Symbols: SDH2-2 | succinate dehydrogenase 2-2 |
chr5:16281404-16283527 FORWARD LENGTH=1132
Length=1132
Score = 959 bits (519), Expect = 0.0
Identities = 737/842 (88%), Gaps = 15/842 (2%)
Strand=Plus/Plus
Query 19 aaaaTGGCGTCTGGTTTGATCGGAAGA-TTGGTTGGAACGAAACCGTCGA-AATTAGCCA 76
|||||||||| |||||||||||||||| || |||||||| ||| | || | |||| |||
Sbjct 56 AAAATGGCGTTTGGTTTGATCGGAAGAGTT-GTTGGAACCAAATCATC-ACGATTATCCA 113
Query 77 CGGCGGTGCGGTTAATTCCGGCGAGATGGACCTCTACGGGAGCGGAGGCGGAAACAAAAG 136
|||||| ||| || ||||||||| ||||||| || || ||| | || || || | ||||
Sbjct 114 CGGCGGCGCGATTGATTCCGGCGCGATGGACATCAACAGGATCAGAAGCACAATCGAAAG 173
Query 137 CTTCGTCTGGCGGCGGAAGAGGATCGAACT-TGAAGACTTTTCAGATCTATCGATGGAAT 195
|||| | |||||| | ||||| || | | ||||||| |||||||||||||||||||||
Sbjct 174 CTTCAACCGGCGGC-G--GAGGAGCG-AGTCTGAAGACGTTTCAGATCTATCGATGGAAT 229
Query 196 CCAGATAATCCAGGGAAGCCAGAGCTTAAAGATTACCAGGTCGATCTCAAGGATTGTGGT 255
||||||||||| || |||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 230 CCAGATAATCCTGGAAAGCCAGAGCTTCAAGATTACAAAATCGATCTCAAGGATTGTGGT 289
Query 256 CCAATGGTTTTAGATGCTTTGATTAAGATCAAAAACGAAATGGATCCATCGCTTACCTTC 315
||||||||| ||||||||||||||||||| || ||||| |||||||||||||| || |||
Sbjct 290 CCAATGGTTCTAGATGCTTTGATTAAGATTAAGAACGAGATGGATCCATCGCTCACTTTC 349
Query 316 CGTAGATCGTGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAACATTGATGGATGTAAT 375
||| | || ||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 350 CGTCGCTCTTGCCGTGAAGGTATTTGTGGTTCGTGTGCTATGAACATTGATGGATGTAAT 409
Query 376 GGACTTGCTTGTTTAACGAAGATTCAAGATGGAGC-ATCGGGGACGACGATTACACCGTT 434
|| ||||||||||||||||||||| || |||| | | | | ||||||||||| |||||
Sbjct 410 GGTCTTGCTTGTTTAACGAAGATTGAATCTGGATCTAAAGAG-ACGACGATTACGCCGTT 468
Query 435 GCCTCATATGTTTGTGATTAAGGATCTTG-TGGTTGATATGACTAATTTTTATAATCAGT 493
||| ||||||||||||||||||||| ||| | || |||||||| ||||||||||||||||
Sbjct 469 GCCGCATATGTTTGTGATTAAGGAT-TTGGTTGTGGATATGACGAATTTTTATAATCAGT 527
Query 494 ATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCATCTGTTCCTGCTAAGGAGA 553
||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 528 ATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAATCCAGCATCTGTTCCTGGGAAAGAGA 587
Query 554 TTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATGAGTGTATTCTTTGTG 613
|||| ||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 588 TTTTACAGAGTAAGAAAGATAGAGCTAAGCTTGATGGAATGTATGAATGTATTCTCTGTG 647
Query 614 CTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGTCTTACCTTGGTCCAG 673
||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||||||||
Sbjct 648 CTTGTTGTAGCACGTCTTGCCCTAGCTATTGGTGGAACCCTGAGTCTTATCTTGGTCCAG 707
Query 674 CTGCTTTGCTACATGCTAATAGGTGGATAAGTGATAGTCGTGATGAGTACACTAAGGAAA 733
|||||||||| ||||| || ||||||||||||||||| || |||||||||||||||||||
Sbjct 708 CTGCTTTGCTTCATGCCAACAGGTGGATAAGTGATAGCCGAGATGAGTACACTAAGGAAA 767
Query 734 GACTTGAAGCTGTTGATGACGAGTTCAAGCTTTACCGTTGCCATACAAT-CTTGAACTGT 792
|||||||||| |||| || |||||||| || || || ||||| ||||| || |||||||
Sbjct 768 GACTTGAAGCCATTGACGATGAGTTCAAACTGTATCGATGCCACACAATTCT-GAACTGT 826
Query 793 GCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATCGCACACATCAAGCAACTT 852
|||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||
Sbjct 827 GCTCGTGCCTGTCCAAAGGGATTGAACCCAGGGAAACAGATCACACACATCAAGCAGCTT 886
Query 853 CA 854
||
Sbjct 887 CA 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43000429832
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5