BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg936494

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G27410.1 | Symbols:  | unknown protein; Has 10 Blast hits to...   590    5e-168


> AT3G27410.1 | Symbols:  | unknown protein; Has 10 Blast hits 
to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:10145244-10145642 REVERSE 
LENGTH=399
Length=399

 Score =  590 bits (319),  Expect = 5e-168
 Identities = 380/408 (93%), Gaps = 9/408 (2%)
 Strand=Plus/Plus

Query  21   ATGGCGAGCCACTTCTTCCTCGTCTTCATTCTCGTAATTCTAACCGTCGCTAATGGAATT  80
            |||||||| || |||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct  1    ATGGCGAGTCATTTCTTCCTTGTCTTCATTTTCGTAATTCTAACCGTGGCTAATGGAATT  60

Query  81   TCAGCAGCTGACTCTGAAAAGTCTCAAGCGCCATCTTCATCAAAGACTCTTGCTGACAAC  140
            ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  61   TCAGCAGCTGATTCTGAAAAGTCTCAATCGCCATCTTCATCAAAGACTCTTGCTGACAAC  120

Query  141  AAACCAACAGTAGATAACTCTACAAAGAGCTTGATTGATAGTCTTGGTCCATCTCAAGAT  200
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  AAACCAACAGTAGATAACTCTACAAAGAGTTTGATTGATAGTCTTGGTCCATCTCAAGAT  180

Query  201  TATCCGGATTACGAAATCCCCTTAGAACTTGCACCAGACGGTGTCGTGGTGGTGGGGGAT  260
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181  TATCCGGATTACGAAATCCCCTTAGAACTTGCACCAGACGGTGTTGTGGTGGTGGGGGAT  240

Query  261  TACGTGCCCATTAGTCCCATCGGTGGAAGACAGACTCCCGATACGCTTGCACAACCTGAA  320
            |||| |||||||||||| |  |  ||||  |   | |||||||||||||| ||| |||||
Sbjct  241  TACGCGCCCATTAGTCCAA--GA-GGAA--C---C-CCCGATACGCTTGCTCAATCTGAA  291

Query  321  GCGGATCAGGATGTCAAATCCTCGACATCTAGCTCCGCCTCTAGATCTTCTTCAACCATT  380
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  292  GCGGATCAGGATGTCAAAACCTCGACATCTAGCTCCGCCTCTAGATCTTCTTCAACCGTT  351

Query  381  TTGGCTGTTGTTGTTGCGATGGGAGGAGCCAGCTTGTTTTTCTTTTGA  428
            |||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct  352  TTGGCTATTGTTGTTGTGATGGGAGGAGCCAGCTTATTTTTCTTTTGA  399



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21363793325


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5