BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936497
Length=303
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27425.1 | Symbols: | ECA1-like gametogenesis related famil... 342 9e-94
> AT3G27425.1 | Symbols: | ECA1-like gametogenesis related family
protein | chr3:10151058-10151375 FORWARD LENGTH=318
Length=318
Score = 342 bits (185), Expect = 9e-94
Identities = 223/241 (93%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 40 AGAAAAATT-TGTGTTCGAGAACCAACATAGACTTTATACCAGGATGTTTCCATGCGTTG 98
||||||||| | |||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 80 AGAAAAATTAT-TGTTCGAGAACCAACATAGACTATATACCGGGATGTTTCCATGCGTTG 138
Query 99 CAATTAGCATATAACAAAAATTACAGTCGCCTAACAAGAAATTGTTGCAGAGCAGTGTTC 158
|||||||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 139 CAATTAGCGTATAACAAAGATTATAGTCTCCTAACAAGAAATTGTTGCAGAGCAGTGTTT 198
Query 159 TCACTTCCTACTACTTGTGTCTTGCTTGTCTATCCTGGAAAAACTTACCCTATTACCACC 218
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||
Sbjct 199 TCACTTCCTACTACTTGTGCCTTGCTTGTCTATCCTGGCAAAACTTACCCTATTACTACC 258
Query 219 TTCAGATTAATTTGTATTTATAGCGATCCTCCTCCAGCAA-GTTCTCCATCAATTCTATA 277
|| |||||||||||||||||||||||||||| |||||||| || |||||| || ||||||
Sbjct 259 TTTAGATTAATTTGTATTTATAGCGATCCTCTTCCAGCAATGT-CTCCATTAAGTCTATA 317
Query 278 A 278
|
Sbjct 318 A 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14024701971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5