BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg936499
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50220.1 | Symbols: | F-box family protein | chr5:20446068-... 121 2e-26
> AT5G50220.1 | Symbols: | F-box family protein | chr5:20446068-20447200
REVERSE LENGTH=1074
Length=1074
Score = 121 bits (65), Expect = 2e-26
Identities = 335/458 (73%), Gaps = 48/458 (10%)
Strand=Plus/Plus
Query 431 TCCTA-A-TGTGGTAGCTATATATAACCCTACCACGAGGCAGTCC-TTTGACTT-ACCAG 486
||||| | || || ||||||||||||||||||||||||||||||| ||| ||| ||| |
Sbjct 352 TCCTATACTGAGGCAGCTATATATAACCCTACCACGAGGCAGTCCCTTT--CTTTACCGG 409
Query 487 AGTTGAAATATAATCACATGTACATGTGTG-ATTTC-TTCTTCGGATACGACCCTATCAA 544
| | ||| | |||||| | | ||| ||||| |||||||||||| ||||
Sbjct 410 AAACCACGGCCGGCCAC-TCC-CATGTGAGCACTTCCTTCTTAGGATACGACCCTTTCAA 467
Query 545 GAATCAATACAAAGTAATCTTCCTAC-CAAGAGGCACCTGGGATG-GGAGTTGTCAAGTT 602
|||||||||||||||||| | |||| ||| | | || | || ||||||| |||
Sbjct 468 GAATCAATACAAAGTAATATGCCTAGACAATT---A--TAAGAGGCGGTGTTGTCATGTT 522
Query 603 TTCACATTGGGAGATCCGACAGCAAAGCAGTGGAGGAACATCCAACACGA-TATTAGACC 661
||||||||||||||| | || || | |||||||||| |||||| | | | || |||
Sbjct 523 TTCACATTGGGAGATGC--CAT-AAGGAAGTGGAGGAAAATCCAATATAACT-TTGGACT 578
Query 662 TCACCAGACGTTGTTAGGTGTGGTTTGCATCAACGGGA-CTATCTATTACCGAG-AAGGG 719
| || | |||||| | ||||||||||| |||| |||||||||||| || ||
Sbjct 579 TTACTTTCCATTGTTACCTCCAGTTTGCATCAA-GGGAACTATCTATTACCAAGCAAA-- 635
Query 720 ACTCGCAATCCTCCTTTT-CTTGTAGATATTAAATTGATGAGTTTTGATGTTAGGTTGGA 778
|| ||| | || | | | | | |||| ||| || ||||||||||| | ||
Sbjct 636 AC----AATA-TGGTTCTACGTAT-G-TATTG--TTG-TG--TTTTGATGTTATATCCGA 683
Query 779 GAAATTTGATCATGTCGAGGCTCCAAA-AGTATTGATGCATTTGCATCGCGATTCGACTT 837
|||||||||||| |||||||||||||| | || |||| || ||||| || | ||||
Sbjct 684 GAAATTTGATCAGGTCGAGGCTCCAAAGACAAT-GATGGAT---CATCG--ATAC-ACTT 736
Query 838 TGATCAACTACCAAGAGAAGTTAGGACTCATCTCTTGC 875
|||| |||||||||| |||||||||| |||| | ||||
Sbjct 737 TGATAAACTACCAAGGGAAGTTAGGATTCATGTGTTGC 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58835038740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5